Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OB05G11800.1

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Description

SUMO (small ubiquitin-related modifier) E3-ligase, Abiotic stress response, Stress adaptatio [Source: Projected from Oryza sativa (Os05g0125000)]

Location

Chromosome 5: 1,148,194-1,160,162 forward strand.

About this transcript

This transcript has 18 exons and is annotated with 21 domains and features.

Gene

This transcript is a product of gene OB05G11800 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	OB05G11800.1	2785	848aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3M3K6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	10	631	-	PTHR10782	-
CDD	117	167	-	cd15570	-
CDD	362	411	E3 SUMO-protein ligase SIZ1/2, SP-RING finger	cd16792	IPR031141 [Display all genes with this domain]
PROSITE profiles	12	46	SAP domain	PS50800	IPR003034 [Display all genes with this domain]
SMART	12	46	SAP domain	SM00513	IPR003034 [Display all genes with this domain]
Pfam	15	44	SAP domain	PF02037	IPR003034 [Display all genes with this domain]
Gene3D	1	73	SAP domain superfamily	1.10.720.30	IPR036361 [Display all genes with this domain]
Superfamily	3	53	SAP domain superfamily	SSF68906	IPR036361 [Display all genes with this domain]
Superfamily	105	171	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	350	431	Zinc finger, MIZ-type	PS51044	IPR004181 [Display all genes with this domain]
Pfam	361	409	Zinc finger, MIZ-type	PF02891	IPR004181 [Display all genes with this domain]
Pfam	118	167	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	117	168	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
PROSITE patterns	118	167	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
Gene3D	106	173	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Gene3D	334	449	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	542	567
MobiDBLite	774	848
MobiDBLite	809	823
Seg	769	781
Alphafold	1	848

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