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    Oryza brachyantha (Oryza_brachyantha.v1.4b) ▼

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    Transcript: OB01G30080.1

    Description

    stomatal cytokinesis defective / SCD1 protein (SCD1) [Source:Projected from Arabidopsis thaliana (AT1G49040) TAIR;Acc:AT1G49040]

    Location

    Chromosome 1: 16,425,463-16,441,982 reverse strand.

    About this transcript

    This transcript has 33 exons and is annotated with 47 domains and features.

    Gene

    This transcript is a product of gene OB01G30080 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
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    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OB01G30080.138301207aa
     
    Protein coding
    		J3L1A2 Ensembl Canonical

    Domains & features

    Domains

    Show/hide columns
    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
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    Domain sourceStartEndDescriptionAccessionInterPro
    Gene3D2180-3.30.450.200-
    CDD8491144-cd00200-
    PROSITE profiles909939-PS50294-
    PROSITE profiles949983-PS50294-
    Pfam9521027-PF23761-
    PROSITE profiles10721104-PS50294-
    PANTHER381195DENN Domain-Containing GEFsPTHR12296IPR051696 [Display all genes with this domain]
    Gene3D207392DENN domain, C-terminal lobe3.40.50.11500IPR043153 [Display all genes with this domain]
    Prints884898G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    Prints967981G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    Prints10491063G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    PROSITE profiles24449Tripartite DENN domainPS50211IPR037516 [Display all genes with this domain]
    SMART846897WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam849897WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles879897WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART902939WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam905939WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles909948WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART942980WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    PROSITE profiles949989WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART9831022WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    SMART10251062WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    PROSITE profiles10321071WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART10651104WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam10661103WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles10721104WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART11081145WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    SMART11631202WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam11731202WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE patterns967981WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
    PROSITE patterns11891203WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
    Superfamily8481205WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
    Gene3D8131026WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
    Gene3D10271207WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
    SMART127311cDENN domainSM00799IPR001194 [Display all genes with this domain]
    Pfam128309cDENN domainPF02141IPR001194 [Display all genes with this domain]
    SMART371441dDENN domainSM00801IPR005112 [Display all genes with this domain]
    SMART6109uDENN domainSM00800IPR005113 [Display all genes with this domain]
    Pfam43108uDENN domainPF03456IPR005113 [Display all genes with this domain]

    Other features

    Show/hide columns
    • Feature type
    • Start
    • End
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    Feature typeStartEnd
    MobiDBLite520547
    MobiDBLite523535
    MobiDBLite818839
    Seg5559
    Seg313326
    Seg373386
    Seg564575
    Ncoils438461

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