Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OB01G10210.1

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Description

chromatin remodeling 8 [Source:Projected from Arabidopsis thaliana (AT2G18760) TAIR;Acc:AT2G18760]

Location

Chromosome 1: 130,499-136,146 forward strand.

About this transcript

This transcript has 9 exons and is annotated with 26 domains and features.

Gene

This transcript is a product of gene OB01G10210 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OB01G10210.1	4772	1176aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KVL5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	360	568	-	cd18000	-
CDD	701	826	-	cd18793	-
CDD	1110	1176	-	cd22254	-
SMART	356	586	Helicase superfamily 1/2, ATP-binding domain	SM00487	IPR014001 [Display all genes with this domain]
PROSITE profiles	372	569	Helicase superfamily 1/2, ATP-binding domain	PS51192	IPR014001 [Display all genes with this domain]
Pfam	703	815	Helicase, C-terminal	PF00271	IPR001650 [Display all genes with this domain]
PROSITE profiles	706	865	Helicase, C-terminal	PS51194	IPR001650 [Display all genes with this domain]
SMART	732	815	Helicase, C-terminal	SM00490	IPR001650 [Display all genes with this domain]
Superfamily	339	619	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Superfamily	621	873	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Gene3D	629	896	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Pfam	363	683	SNF2, N-terminal	PF00176	IPR000330 [Display all genes with this domain]
Gene3D	341	618	SNF2-like, N-terminal domain superfamily	3.40.50.10810	IPR038718 [Display all genes with this domain]
PANTHER	170	1166	SNF2/RAD54 Helicase and DNA Repair	PTHR45629	IPR050496 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	266	336
MobiDBLite	322	336
MobiDBLite	897	936
MobiDBLite	922	936
MobiDBLite	1084	1106
Seg	104	117
Seg	135	164
Seg	318	332
Seg	454	470
Seg	1085	1107
Alphafold	1	1176
Ncoils	969	989

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