Oryza barthii (O.barthii_v1)
Description

UBC3 [Source:Projected from Arabidopsis thaliana (AT5G62540) UniProtKB/TrEMBL;Acc:A0A178ULQ4]

Location
About this transcript

This transcript has 6 exons, is annotated with 9 domains and features and maps to 38 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OBART05G05510.11193231aa
 
Protein coding
A0A0D3G3Y5 Ensembl Canonical
-OBART05G05510.3998166aa
 
Protein coding
A0A0D3G3Y7 -
-OBART05G05510.5926142aa
 
Protein coding
A0A0D3G3Y9 -
-OBART05G05510.6908136aa
 
Protein coding
A0A0D3G3Z0 -
-OBART05G05510.2494163aa
 
Protein coding
A0A0D3G3Y6 -
-OBART05G05510.4363120aa
 
Protein coding
A0A0D3G3Y8 -
Codons
  • Alternating codons
  • Alternating codons
Exons
  • An exon
  • Another exon
Variants
  • loading
Other
  • UTR
Markup
  • loading
                                                                          
     1 ATGGCCTTGTTGGGTTCATCGGATGACCTCGGTCTGGTGAATATGTCGACGCCAGCAAGG     60
     1 ATGGCCTTGTTGGGTTCATCGGATGACCTCGGTCTGGTGAATATGTCGACGCCAGCAAGG     60
     1 -M--A--L--L--G--S--S--D--D--L--G--L--V--N--M--S--T--P--A--R-     20

                                                                          
    61 AAGAGGTTGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGG    120
    61 AAGAGGTTGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGG    120
    21 -K--R--L--M--R--D--F--K--R--L--M--Q--D--P--P--A--G--I--S--G-     40

                                                                          
   121 GCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGCCCTGATGATACT    180
   121 GCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGCCCTGATGATACT    180
    41 -A--P--Q--D--N--N--I--M--L--W--N--A--V--I--F--G--P--D--D--T-     60

                                                                          
   181 CCTTGGGATGGAGGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAG    240
   181 CCTTGGGATGGAGGTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAG    240
    61 -P--W--D--G--G--T--F--K--L--T--L--Q--F--T--E--D--Y--P--N--K-     80

                                                                          
   241 CCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACATTTATGCTGATGGGAGC    300
   241 CCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACATTTATGCTGATGGGAGC    300
    81 -P--P--T--V--R--F--V--S--R--M--F--H--P--N--I--Y--A--D--G--S-    100

                                                                          
   301 ATATGCTTAGATATACTACAAAACCAGTGGAGCCCCATATATGATGTTGCTGCTATACTC    360
   301 ATATGCTTAGATATACTACAAAACCAGTGGAGCCCCATATATGATGTTGCTGCTATACTC    360
   101 -I--C--L--D--I--L--Q--N--Q--W--S--P--I--Y--D--V--A--A--I--L-    120

                                                                          
   361 ACATCCATCCAGTCGCTGCTTTGCGATCCAAACCCAAATTCACCTGCCAACTCTGAAGCT    420
   361 ACATCCATCCAGTCGCTGCTTTGCGATCCAAACCCAAATTCACCTGCCAACTCTGAAGCT    420
   121 -T--S--I--Q--S--L--L--C--D--P--N--P--N--S--P--A--N--S--E--A-    140

                                                                          
   421 GCCCGCCTATTCAGTGAGAACAAGCGGGAATACAACCGCAAAGTTCGTGAGATAGTGGAG    480
   421 GCCCGCCTATTCAGTGAGAACAAGCGGGAATACAACCGCAAAGTTCGTGAGATAGTGGAG    480
   141 -A--R--L--F--S--E--N--K--R--E--Y--N--R--K--V--R--E--I--V--E-    160

                                                                          
   481 CAGAGCTGGACCGCGGACTGATCCACTCCATCTAACCATATGATGCCTGATACTTAAAAC    540
   481 CAGAGCTGGACCGCGGACTGA.......................................    501
   161 -Q--S--W--T--A--D--*-.......................................    166

                                                                          
   541 GCTCATCTTTTCAGTGTGTCGTGTACCAAACTGCTTGTAATTAAAATGCTAAAACAGTAA    600
       ............................................................       
       ............................................................       

                                                                          
   601 AACGTGCTTACTGTTATGTATGCCCTTCCCGAATACGAGGAAGGCTTTGGACCATGTTGA    660
       ............................................................       
       ............................................................       

                                                                          
   661 GGACCATATGGACTTCTTATATAACATCTATTGTTGCCAGCTACTAAGTGTTAAATGCTA    720
       ............................................................       
       ............................................................       

                                                                          
   721 TATTGAGTACGAAGCCGTGCCTAAAATTCAATGAGTAATTCTTTTCGCCATTCAAGGAAT    780
       ............................................................       
       ............................................................       

                                                                          
   781 TACCTCGTGGGCTATATGTATTTTATGCTCTAGTTCCAATATCTATCTTTACCTTGAGGA    840
       ............................................................       
       ............................................................       

                                                                          
   841 TTAACCAATATCGAGATGGATTCAACCGGAATGCGCTCAGACGTGTGAGTGTACTTGTGT    900
       ............................................................       
       ............................................................       

                                                                          
   901 GAGAAAAAAAAAAGACAGATTTTTTCAGTTTGTCGTCTGGAATTTCAATCTGGATGGGTA    960
       ............................................................       
       ............................................................       

                                                                          
   961 GGGATTAATGCAAAAATCTGAAGCAGATATAATTTCAC                          998
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