Oryza barthii (O.barthii_v1)
Description

Autophagy-related protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A0D3HGL3]

Location
About this transcript

This transcript has 9 exons, is annotated with 4 domains and features and maps to 26 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OBART10G18480.1921306aa
 
Protein coding
A0A0D3HGL3 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ctccggcgagcggaggcaaccctggggctaggggcgaggcgagcagcagg
1OBART10G18480.1.exon118,310,52218,310,36202161
ATGCAGGTGAAGCAGAAGGTGTACGAGCTCTACAAGGGGACGGTGGAGCGGGTCACGGAG
CCGCGCACCGTGTCGGCGTTCCTCGAGAAGGGCGTCCTCTCCGTCCCCGAGTTCATCCTC
GCCGGCGACAACCTCGTCTCCAAGTGCCCCACCTGGTCCTG                   
 Intron 1-218,310,36118,310,251111
gtaggcatctcctccgttgcccccc..........atctcggtgggtgtttcctgtgcag
2OBART10G18480.1.exon218,310,25018,310,1802171
GGAGGCGGGCGATCCGAGCAAGAGGAAGCCTTATCTCCCTCCCGACAAGCAATTCCTCGT
CACCAGGAACG                                                 
 Intron 2-318,310,17918,309,933247
gtatgctgattctgaattggttcta..........attgaaattttggttctgctggcag
3OBART10G18480.1.exon318,309,93218,309,8491184
TGCCTTGCCTAAGACGCGCTGTCTCGCTTGAAGAAGAGTATGATGCAGCAGGAGCTGAGG
TAGTTCTCGGTGATGATGAGGACG                                    
 Intron 3-418,309,84818,309,728121
gtgaaggctggcttgccacacatgg..........cttttgttctgttggtaatgtatag
4OBART10G18480.1.exon418,309,72718,309,55510173
CATCAAAGCCAGAAGAGGAGGAAGACATACCCTCGATGGATACATTGGATATAGGGAAAA
CTGAAGGGATAAAGTTTATTCCCTCATACTTCAGTGCTGGTAAGAACACTGAAGAAGAGG
AGGAGGATATACCAGACATGGACACTTATGAAGACACAGGGAATGATTCAGTG       
 Intron 4-518,309,55418,309,455100
gtaagaaagactgtgatcctatctt..........ctttgccttcgtcatcttattttag
5OBART10G18480.1.exon518,309,45418,309,3690286
GCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAACATCCTTCGC
ACTAGGACATATGACGTTAGCATCAC                                  
 Intron 5-618,309,36818,308,664705
gtaagctcttttatttgatatgcat..........gtaacaggtagttctcttgttccag
6OBART10G18480.1.exon618,308,66318,308,6122052
ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAG        
 Intron 6-718,308,61118,308,53280
gtaagtcattttgcccttagaagtg..........tcatttaatttgattgttgttgcag
7OBART10G18480.1.exon718,308,53118,308,4660066
TCAAGAATGCCACTAAAGCCTGAACTTGTGTTTGAAGATATCAGCCAAGACCATGCGCGG
AAGACG                                                      
 Intron 7-818,308,46518,307,825641
gtactttcattcgttttagtatttg..........actgaagtggattgtgttgccacag
8OBART10G18480.1.exon818,307,82418,307,69402131
GTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGCATCCATGC
AAACACGCTGCTGTGATGAAAAAGATCATTGATGTCCTAATGTCTCGAGGAGTTGAACCA
GAAGTTGACAA                                                 
 Intron 8-918,307,69318,307,591103
gtaatattatctacagagatacctt..........taacttgtgtttctcttttggacag
9OBART10G18480.1.exon918,307,59018,307,4942097
GTACCTTTTCATATTTTTGAAGTTTATGGCCTCAGTCATACCCACTATTGAATATGACTA
CACTATGGACTTCGATCTGGGCAGTACAAGCAGATGA                       
3' downstream sequence
tttgttaattgaaggtatgctcaatcatcttataatctggcgtgcattct..........