Oryza barthii (O.barthii_v1) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 9: 10,509,610-10,511,944 reverse strand.
This transcript has 5 exons, is annotated with 15 domains and features and maps to 17 oligo probes.
This transcript is a product of gene OBART09G09010 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........cacacctcctcccccgcctcctcctctagggtttcctcccaatcccctcc
| ||||||
| 1 | OBART09G09010.1.exon1 | 10,511,944 | 10,511,872 | 0 | 1 | 73 |
ATGGCCAAGACCAAGCAGGGCAAGAAGGACGTCGAATCCTACACCATCAAGGGCACCACC AAGGTCGTCCGAG |
| Intron 1-2 | 10,511,871 | 10,511,789 | 83 |
gtacgggccgcttctcgctttcttc..........tgatgagggtttgtgggtgtggaag
| |||
| 2 | OBART09G09010.2.exon2 | 10,511,788 | 10,511,497 | 1 | 2 | 292 |
TGGGGGATTGCGTGCTGATGCGGGCGTCGGACACGGAGAAGGCGCCGTACGTGGGGAGGG TGGAGAGGCTGGAGACGGACGGGAGGGGGAGCGTGCGGGTGCGGTGGTACTACCGGCCGG AGGAGTCCAAGGGCGGGAGGAGGCAGTTCTATGGCGCCAAGGAGCTGTTCCTCTCCGACC ACTTCGACACCCAGAGCGCCCACACCATCGAGGGCAAGTGCGTCGTCCACTCCTTCAAGA ACTACACCAAGCTCGACAACGTCGGCCCCGAGGACTTCTTCTGCCGCTTCGA |
| Intron 2-3 | 10,511,496 | 10,511,320 | 177 |
gtacaaggccgccaccggcgccttc..........tttgggtgtgtgtgtgtgtgtgcag
| |||
| 3 | OBART09G09010.1.exon3 | 10,511,319 | 10,511,251 | 2 | 2 | 69 |
GTACTGCAAGTGCGAGATGCCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATG CAAGGACTG |
| Intron 3-4 | 10,511,250 | 10,509,924 | 1,327 |
gtaaatcacttggggacatcctacc..........aatattcaacttttaacttgtgcag
| |||
| 4 | OBART09G09010.1.exon4 | 10,509,923 | 10,509,785 | 2 | 0 | 139 |
GTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAATATTAGATCATTTCCT GTGCGCAGATTGTGTCAAAGAAAATGGTACGAAGAGACCTTCAAATTCATATCCAGCATC ATCAAATTCTGATTCTAAG |
| Intron 4-5 | 10,509,784 | 10,509,622 | 163 |
gttggttacttaagctctatctctt..........ttgtttttgcttctcaattactcag
| |||
| 5 | OBART09G09010.1.exon5 | 10,509,621 | 10,509,610 | 0 | 0 | 12 |
GTCATTATTTGA
|
| 3' downstream sequence |
tgttgacggagaaatactcaacttctttttcaaactttgctgtcatgaac..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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