5' upstream sequence
{"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only","provisional":{"expect":[],"flourishes":{},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#008000"]]},"legend":{"exons/Introns":{"flanking":{"class":"ef","default":null,"label":"#008000","text":"Flanking sequence"}},"_messages":[]}}}
..........gtgcgtgcgcttcgcttgcttaacgttcacccacgccacgccgccaccgc
1 OBART08G22700.1.exon1 21,829,578 21,829,826 - 0 249
{"provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"seq":[{"style":[2]},{"style":[2,-11,1]},{"style":[1]},-1,{"style":[1,-8,0]}],"expect":[],"flourishes":{},"legend":{"exons/Introns":{"utr":{"class":"eu","text":"UTR","default":null,"label":"#cd6839"},"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"},"exon1":{"class":"e1","text":"Translated sequence","label":"#1044ee","default":null}},"_messages":[]}},"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only"}
CTCGCTTTTCCTTCTCCACCATTTCTCCTTGTCTCCCACCACCACTTCCCCCCTTCTCCG ATCCCTCCTCCCATGGACGCCGCCAAGGATACCGCCGCCGCCGCCGCCGACCAAAACCCT ACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGGG AGACGGCCCTTCACCAGCCTCACCCAGGAGGAGGCCGACCTCGCCCTCGCCCGCGTCCTC CAGGAGCAG
Intron 1-2 21,829,827 21,829,922 96
{"provisional":{"flourishes":{},"expect":[],"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"utr":{"text":"UTR","default":null,"label":"#cd6839","class":"eu"},"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"},"exon1":{"class":"e1","label":"#1044ee","default":null,"text":"Translated sequence"}},"_messages":[]}},"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only"}
gtaaaagccgtacgccgccgcctcg..........ttattttttttttttgtcggcgcag
2 OBART08G22700.1.exon2 21,829,923 21,830,232 0 1 310
{"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only","provisional":{"flourishes":{},"expect":[],"seq":[{"style":[1]},-4,{"style":[1,-9,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"}},"_messages":[]}}}
GAGAGGGCGTACATGATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGT GGGAGCTACGAGTTTGACGAGGAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGAC GGGGACGGCGACGGGGAGGCGCTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGAC GCCGCCGGTGACCCGGCTGAGTTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCG CGGGCGCTGCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGC CTCAGTGATT
Intron 2-3 21,830,233 21,830,347 115
{"provisional":{"expect":[],"flourishes":{},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"utr":{"label":"#cd6839","default":null,"text":"UTR","class":"eu"},"flanking":{"class":"ef","text":"Flanking sequence","default":null,"label":"#008000"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"}},"_messages":[]}},"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only"}
gtgagtgcacaagggagaattttat..........tgttgttgttgttgttgttttgtag
3 OBART08G22700.1.exon3 21,830,348 21,830,442 1 0 95
{"provisional":{"legend":{"exons/Introns":{"intron":{"class":"ei","text":"Intron sequence","default":null,"label":"#aaaaaa"},"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"},"exon1":{"class":"e1","text":"Translated sequence","default":null,"label":"#1044ee"}},"_messages":[]},"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1]},{"style":[1,-34,0]}]},"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only"}
GGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGAGGATGATGACGATGATG ATGATGATGAAGATGAAGACGGGGATGATCCACAG
Intron 3-4 21,830,443 21,831,100 658
{"provisional":{"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"expect":[],"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"flanking":{"label":"#008000","default":null,"text":"Flanking sequence","class":"ef"},"exon1":{"class":"e1","label":"#1044ee","default":null,"text":"Translated sequence"}},"_messages":[]}},"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only"}
gtgacattttcttccatttcatgag..........cttttttatttacttctgactttag
4 OBART08G22700.1.exon4 21,831,101 21,831,142 0 0 42
{"provisional":{"seq":[{"style":[1,-41,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"flourishes":{},"legend":{"exons/Introns":{"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"flanking":{"class":"ef","default":null,"label":"#008000","text":"Flanking sequence"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"}},"_messages":[]}},"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only"}
GATGCATGGGAAGATGTTGATCCAGATGAATATTCTTATGAG
Intron 4-5 21,831,143 21,831,243 101
{"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only","provisional":{"legend":{"exons/Introns":{"intron":{"class":"ei","text":"Intron sequence","default":null,"label":"#aaaaaa"},"utr":{"text":"UTR","default":null,"label":"#cd6839","class":"eu"},"flanking":{"class":"ef","text":"Flanking sequence","default":null,"label":"#008000"},"exon1":{"class":"e1","label":"#1044ee","default":null,"text":"Translated sequence"}},"_messages":[]},"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}]}}
gtaagttgtttgttcccttaaaaaa..........taaaatttaatgttggtgttcttag
5 OBART08G22700.1.exon5 21,831,244 21,831,365 0 2 122
{"provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1]},-1,{"style":[1,-1,0]}],"expect":[],"flourishes":{},"legend":{"exons/Introns":{"intron":{"class":"ei","label":"#aaaaaa","default":null,"text":"Intron sequence"},"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"}},"_messages":[]}},"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only"}
GAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACG CTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAAGCAAGACGGCAACATGGAA CA
Intron 5-6 21,831,366 21,831,434 69
{"provisional":{"legend":{"exons/Introns":{"intron":{"class":"ei","default":null,"label":"#aaaaaa","text":"Intron sequence"},"utr":{"class":"eu","text":"UTR","default":null,"label":"#cd6839"},"flanking":{"class":"ef","text":"Flanking sequence","default":null,"label":"#008000"},"exon1":{"class":"e1","text":"Translated sequence","default":null,"label":"#1044ee"}},"_messages":[]},"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}]},"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only"}
gtatgttaatatctccccccttttt..........actgataaatgaaactaatttgcag
6 OBART08G22700.1.exon6 21,831,435 21,831,543 2 0 109
{"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1]},{"style":[1,-48,0]}],"flourishes":{},"expect":[],"legend":{"exons/Introns":{"intron":{"class":"ei","label":"#aaaaaa","default":null,"text":"Intron sequence"},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"flanking":{"class":"ef","default":null,"label":"#008000","text":"Flanking sequence"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"}},"_messages":[]}}}
ATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAA GCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAG
Intron 6-7 21,831,544 21,831,789 246
{"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only","provisional":{"legend":{"exons/Introns":{"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"utr":{"text":"UTR","default":null,"label":"#cd6839","class":"eu"},"flanking":{"text":"Flanking sequence","default":null,"label":"#008000","class":"ef"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}],"flourishes":{},"expect":[]}}
gtatataattaacagcatctccagt..........ataaatttccttgattgctttgcag
7 OBART08G22700.1.exon7 21,831,790 21,832,252 0 - 463
{"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only","provisional":{"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"},"exon1":{"label":"#1044ee","default":null,"text":"Translated sequence","class":"e1"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"seq":[{"style":[1,-53,2]},{"style":[2]},-5,{"style":[2,-42,0]}],"expect":[],"flourishes":{}}}
GTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACACCCGGGCATGACATCAC TACATATTGTAGCCATTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTT CTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGT GTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATG TATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAGCAA TTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAATTTTT TTTAAAATATACTCTCTCTTTTTCATATTTTACATTTATATACACGTCTGAGATTAATTT GCAAAAATATACCTAACCCGCGGATTGGTTATGCGGGTGCGAG
3' downstream sequence
{"provisional":{"flourishes":{},"expect":[],"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#008000"]]},"legend":{"exons/Introns":{"intron":{"class":"ei","default":null,"label":"#aaaaaa","text":"Intron sequence"},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"flanking":{"class":"ef","default":null,"label":"#008000","text":"Flanking sequence"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"}},"_messages":[]}},"url":"/Oryza_barthii/Component/Transcript/Exons/exons?g=OBART08G22700;r=80X0P+021829578-21832252;t=OBART08G22700.1;db=core;time=1755078790814.814;adorn=only"}
ggcgaaccacgtactcgagccggtcgcgcggaactgggatgagcaactga..........
Oryza barthii (O.barthii_v1) ▼ 
Summary
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