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Oryza barthii (O.barthii_v1)
Description

RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A0D3H2Q2]

Location
About this transcript

This transcript has 17 exons, is annotated with 27 domains and features and maps to 32 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OBART08G22120.12472603aa
 
Protein coding
A0A0D3H2Q2 Ensembl Canonical
-OBART08G22120.22364567aa
 
Protein coding
A0A0D3H2Q3 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
  • loading
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........attagtgaatcccctcctcttattgcttcacaattcccaaaagtgtacca
1OBART08G22120.1.exon121,391,32421,391,459--136
CACTGGTATATAAAAAACACCCCATCCTGTGTGCCTGCCGACTCGCCCACGCAACTCCGA
CTCTTTCCTTCCCCAATTCCCCCGTCCACCGGCCGCGGGCCTCGCCGGAACCCTAGCCCC
GCCGCCCCCCTCCCCT                                            
 Intron 1-221,391,46021,391,619160
nnnnnnnnnnnnnnnnnnnnnnnnn..........gccccgccgccccctcccctcccct
2OBART08G22120.1.exon221,391,62021,391,882-2263
CTCCGATCGCCCGATTCGGTGGTCGGGGTGATGGACTCCGACGCCGAGATGCCCATGTCC
AGCGACGAGGAGATGCTGGATGACGAGGACTATTACGACTACAGTGATGACATGGGTGAG
GACGATGATGGGAGCGGCGGCGGGGGCGGGGAGGGGGAGATAGCGATGAGGAGGAGGAGG
GGGAGGAGGAGGAGCTGGTGGGCGGCGACTACGAGGGCCGCGAGGCGGAGGGGAGCGACG
AGGTGGTGTCCCGCCGCGAGCAG                                     
 Intron 2-321,391,88321,392,744862
gtgaggattttttggtcggaaacag..........tgataatgtgttgctagtttgatag
3OBART08G22120.1.exon321,392,74521,392,7572013
CTTAAATACAAAG                                               
 Intron 3-421,392,75821,392,965208
gttaaaaggcggataattaatcgca..........gcccatgtttggtaactatggacag
4OBART08G22120.1.exon421,392,96621,393,0600295
AGATACATTGTATTAACTGAAAAGGATATAAATGAGCGTCAAGAGGAAGATATAGGCAAG
GTATCTGCTGTACTATCGATTCGAAGGGAGGAGGC                         
 Intron 4-521,393,06121,393,637577
gtgtgttcttcttcatcactacaaa..........taatctttatgagttctctgttcag
5OBART08G22120.1.exon521,393,63821,393,74020103
GAACATCAGCAAGCTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGTGATATTGT
TGGATTACTTTTAAATGGAATTGATCTTCCTAACTCTAGAAAG                 
 Intron 5-621,393,74121,393,877137
gtttgtattatttattcaaatgcca..........catctgacagctgttttggttgcag
6OBART08G22120.1.exon621,393,87821,393,9680191
CTAACTTGTGGAATATGTTTTGAAGGGTATTCTTCTGATGCAATGAGTTCTGCTGGTTGT
GATCATTTTTATTGCCATGAATGCTGGGAAG                             
 Intron 6-721,393,96921,394,214246
gtctctctctctctctctctctctc..........tgataatataaattcaacctttcag
7OBART08G22120.1.exon721,394,21521,394,38710173
GTTATATTAGTGCTGCAATAAGTGATGGTCCAGGATGTTTGTCATTGCGATGCCCTGATC
CATCTTGTGGTGCTATGGTTCTTCAGAACATGATTAATAAGTTAGCTAAAGATGATGATA
AAGTGAGATATGCACGATTTATCTTACGTGCATATGTTGAAGATAGCAAGAAG       
 Intron 7-821,394,38821,394,535148
gtaatatgtttgaacaagccaacta..........gtataacctatggcatttcctgcag
8OBART08G22120.1.exon821,394,53621,394,63700102
ACTAAATGGTGTCCAGCTCCTGACTGTACATGTGCAGTGGAATTTGTCAGCGATGGGAAC
TATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAAC                  
 Intron 8-921,394,63821,394,741104
gttagtatttctggctccattttcc..........atcaatgctttggtgatgtttgcag
9OBART08G22120.1.exon921,394,74221,394,8300289
TGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGATATTAAAG
AATAGCGCAGAATCTGAAAATATGAACTG                               
 Intron 9-1021,394,83121,395,8531,023
gtatggttcaggctcaaaactttat..........tcatgttgttgatgatccttttcag
10OBART08G22120.1.exon1021,395,85421,395,96122108
GATACTGGCTAATTCTAAGCCGTGCCCGAAATGCAAACGACCAATAGAGAAAAACCAGGG
ATGCATGCATATGACTTGCACTCCACCTTGCAAATTTGAGTTCTGCTG            
 Intron 10-1121,395,96221,396,04988
gtatagtccaatgtctatgcttgct..........catttgttttctttgaacatttcag
11OBART08G22120.1.exon1121,396,05021,396,1402091
GTTATGTCTGGGTTCATGGGCTGAACATGGGGAGAGAACTGGTGGATTTTACGCTTGTAA
TCGCTATGAATCAGCAAAGAAGGAGGGAGTT                             
 Intron 11-1221,396,14121,396,349209
gtatgttttatcttgagactatcca..........cctaacttaattacctctaatgcag
12OBART08G22120.1.exon1221,396,35021,396,4390090
TATGATGAGACTGAAGCAAGGAGGGAAAGAGCCAAAAATTCACTTGAGAGATACATGCAT
TACTATGAGCGCTGGGCATCTAATCAGACG                              
 Intron 12-1321,396,44021,397,051612
gtatattcaacatgctcaagtttga..........ctgacatattcacttatattgccag
13OBART08G22120.1.exon1321,397,05221,397,0990048
TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA            
 Intron 13-1421,397,10021,397,227128
gtaagcattggcatcatgttaggtt..........tctatttcttctctatgtgctacag
14OBART08G22120.1.exon1421,397,22821,397,2990072
CTTGCAAAATTAACAGATGTTTTTGGAATACCGGAGACCCAACTGAAGTTCATAATTGAA
GCTTGGTCACAG                                                
 Intron 14-1521,397,30021,397,39697
gtttgatatcataaatatgtcatga..........caccattccactatgtctatttcag
15OBART08G22120.1.exon1521,397,39721,397,4900194
ATTATTGAATGCAGGCGGGTGCTCAAATGGACATATGCTTATGGCTATTATCTGGACGAC
AAGGTCAAGAGCGAATTTTTCGAGTACCTGCAAG                          
 Intron 15-1621,397,49121,397,58090
gtagttgtttgttgcatttcaaaat..........ggtatgtatattatatcttttatag
16OBART08G22120.1.exon1621,397,58121,397,72812148
GTGAAGCTGAGTCTGGTCTGGAGCGTCTTCACCAATGTGCTGAGAAAGACCTGCAATCAT
TTTTGACTGTGAGATCTGATAATACTGAACCTGCACCATCAATTGCTGAATTCGGTGACT
TCCGGGTGAAGCTTGCGGGGCTGACAAG                                
 Intron 16-1721,397,72921,398,662934
gtatttcacagttatggtttttcct..........tgactttgcttcgtctccactgcag
17OBART08G22120.1.exon1721,398,66321,399,4182-756
TGTGACTCGGAATTATTTTGAGAACCTTGTTCAAGCACTGGAGGCTGGCTTGGAGGATGT
ACACTCTACTGCCCAGGGTACCACATCAAGCAATGCCACCAACATCCCCTCCAAGAAAGC
AGTCACTAAAGGCAAAACAAAGAAGCAGCTTCCTAGAACATCTTCGGACAACTCAGATGA
AGGCTGGCCTTGTGAGCGCTGCACGTTTATTAACCCTTCATCGGTGGATGCATGCAGCGT
TTGCGATAAGCATAGATACTAGATGAAAAACTGGCTGAAAGCCAGTGCCCCCTATAAATC
TCGAAGCTGTTGAGAAGGTGGGTGCTTACTCAAAGCTCATGAGAAGATTGTTGATTGTAG
TTCTGTTCCTAAATTATGTGGCGTTGAAGAAGAGCTTCCAATGGCAGCAATGGCGTACAT
GTGTGAGTGAAGGTCCCTGGTATCTAGTTTGCAACAACAATGCAGGACCGACTATGGAGC
GAAGGTGGATGGGGTACAAACATGTGGTAGTCTTTTTTTTTTTTTTTTACTTTCTAGCCT
ATATTATGTACATATTAGTTATGGTCTGTAGTTGTGTTAATGTGGTGGGCAATGTTCTGT
TTTTGTTTAAATGGCATGAGATGATGTGGTGGGTAAAGTTCCACTCCTGTACTGACCAAC
CTGTGAAGCTGGAGAATGGTAGATGTAGCTCTTATCTATTGAGCGGTCATGTAAATTACC
AAAGCTCGTCATAATCTATGGTTGATATATCATGTG                        
3' downstream sequence
ggaaaatggtgtttactcagcagtgcctgatttcttatagattcgtcgtt..........