Oryza barthii (O.barthii_v1) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 6: 4,429,430-4,433,860 reverse strand.
This transcript has 6 exons, is annotated with 13 domains and features and maps to 54 oligo probes.
This transcript is a product of gene OBART06G06300 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........ggcggcgtccgtttctcatctaccgtcggcgttgggggggacgccgcccc
| ||||||
| 1 | OBART06G06300.1.exon1 | 4,433,860 | 4,433,809 | 0 | 1 | 52 |
ATGGGCCGGTCGCCAGCGATATATCACTATCAGCTCATCGACCGGCGGAAAG
|
| Intron 1-2 | 4,433,808 | 4,432,378 | 1,431 |
gtaattaattaacaccctcccggcc..........ttaaaaatgacttcactcaataaag
| |||
| 2 | OBART06G06300.1.exon2 | 4,432,377 | 4,431,659 | 1 | 0 | 719 |
TTGTTTCCAATGGAGATACAAGGTCAATGTTGCCAAATAAAGTCACAGCATTGAATCCCA ACGCAGCAGAATTTGTACCTTCATGTATTAGACCATCTTTTGAGAGTAGCGCTGTCTCAG ATGTAAGTAAGGCAGATCTTAGGGCTTCTGGGAAAACTATCCTAGATAGGTCCGAGTCAT CAAAGTCAAATAACTCGGATGATGAGGCACACCAGTTTTGGCGTAAGCAGCTTCCTGATG ACATTATTCCAGACTTCAGTTTTGAGAAAATTGAACAAGAACCTGAAGAATTGTCTCTTG CTGGATTATCCTTGAATGCACCCCCTTTCTATGGAACAACAGCTAGCCGCTTTTCAAGAG AGCATGATTTATCTTCTCAAGCTAACAAGAGCCTGGAACTGGGGCTTACCAGTTTACTTT ATGAAGATAATTCACAAGCATCGTTTCCAACTATGGGTTCAAGCAATTGGGAGCAAAATT TTGTAGGGGATCTCCATTTTACGAATGGAAATCAGGGCCTTCATTATGATTCTGAAAGTG CTGCAGGCTTTTCTGACAGTTTTGCTAGCGATTATGCTGCAGCAACAGACGATGTTCTTG ACCCCCTAGCGTATTTAGCTTCACAGTTTCCTGATTTTTCATCAGAGAGCCTTGCAGAGC TGTACTATGCTAATGGATGTGACTTCAACCATACTATTGAAATCCTCACCCAGCTAGAG |
| Intron 2-3 | 4,431,658 | 4,431,105 | 554 |
gtaatcccttctgttagtgaaactg..........tagtgatatcatttttgtttttcag
| |||
| 3 | OBART06G06300.1.exon3 | 4,431,104 | 4,430,723 | 0 | 1 | 382 |
ATGCAAGTTGATGCTACCTCCAATCCAACTCTGACCCCCAGGACACCAAACTTTAGCACA GGGGACTTCCCCGCACTGCCAACAGTTGAAGACCAAAATGGTTTTTCCAAAGGCAATGCA GATATTCTAAGCATCTTCAATGGACGCAGCTCACCCTCTGTATCTACTGGTACTGGTGAT TTTGTTTCAGCTGTTCGCAAACTTGCATCGCAAAATTCTGGCCATTGGAAGTATAAGAAA GGTCCTGAATACGGTAATGGTGTTTCAACTGTTTCTGTACCCAAGCAGTACAGTTCTACG ACCAAAACATCTTCTGGAAACAAGTTTCAAAGTGTTAGCAGTGCAAGAGCTGCTCCATGG CTCGAAACTGGAGATGCAGTAG |
| Intron 3-4 | 4,430,722 | 4,430,598 | 125 |
gtaatgcccatcttgatattccaag..........tttatgtttatatgcaaatcaatag
| |||
| 4 | OBART06G06300.1.exon4 | 4,430,597 | 4,430,527 | 1 | 0 | 71 |
CAAACATGTACTCAGAATCAAGGGGAGAAGCCCGTGATTTTGCCCGCATCCGAAATGCAT GTTTTGAGCAG |
| Intron 4-5 | 4,430,526 | 4,429,995 | 532 |
gtaagcatcatccattgtggtctca..........atttacataaagatctacttgacag
| |||
| 5 | OBART06G06300.1.exon5 | 4,429,994 | 4,429,870 | 0 | 2 | 125 |
GCTAGACAGGCTTACCTGATTGGCAACAAAGCTCTAGCCAAGGAATTGAGTATGAAGGGG CAGACATATAACACACAAATGAAAGCATCTCATGAGAAAGCAAGAGAAGCTATTTATCGA CAGAG |
| Intron 5-6 | 4,429,869 | 4,429,710 | 160 |
gtcacctaactggttccctgttctt..........atgtttttgtttcaatgttcctcag
| |||
| 6 | OBART06G06300.1.exon6 | 4,429,709 | 4,429,430 | 2 | 0 | 280 |
GAACCCATCTTCGCAACGAGGGAGCGACCGTCTGATCGATCTACATGGTCTCCATGTGAA CGAAGCAATCCATATACTTAAGGTCGAGCTCGGTGCTCTTAAGAGCACCGCGAGGGCTAC AGGTGAGAGGATGCAAGTCATGATATGTGTCGGGACAGGTCATCACACCAAGGGTTCTCG CACCGCCAGGCTGCCCATCGCCGTCGAGCAGTTTCTTCTGGAGGAAGGCCTCCACTACAC GCAGGCACAACCTGGTTTGCTCCGTGTTGTGGTGTTCTAA |
| 3' downstream sequence |
catctcttaggtcagcagcacgaagaaaaaagaagcaaaacaaaaaaagg..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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