Transcript: OBART05G00890.1

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OBART05G00890.1	1410	469aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3G2G8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence

Markup

loadingloaded

▼▲


..........cgccacccactgcgccttcgccggcggcggaggaggagggaggtgcggcc
ATGGGTCACGGTGTCAGCTGCGCCCGCACCGGCGACGAGCACGACTTCTTCCGGGCGGCG
CAGCTCGGCGACCTCGACGCCCTGGCCGCCCTCCTCGCCGCCGACCCTTCCCTCGCCCGC
CGCGCCACCCTCTACGACCGCCTCTCCGTCCTCCACATCGCCGCCGCCAATGGCCGCATC
GAGGTCGCTCACCTCACTGCTTCTTCTTCTTCTTCTTCCCTCGGTCTCCGGGACTTGCTT
gtctcaccctttctctcttgttttctttcttcttcttcttccag                
GTGCTCTCCATGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAG
gtgcgagatccccaccaaaatctct..........tgctcttcttctgcttatgctgcag
ACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAACTCCTCCAG
GCCGACGCAAAT                                                
gtgagagaaaagaactgcaaaatca..........agtaacagttacgatttcgcaccag
ATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCGTACTACGGC
CACGTCGACTGCCTGCAGGCCATCCTCGCCGCCGCGCAGACCACGCCGGTGGCCGACTCA
TG                                                          
gtgagatcatcctcatcctgtcgtg..........acttgctgctgtcgaagcttggcag
GGGTTTCGCCCGGTTCGTCAACGTCAGGGACGACCACGGCGCCACGCCGCTGCATCTCGC
GGCCAGGCAGGGGCGGCCGGGGTGCGTGCAGGTGTTGCTGGAGAACGGCGCCATTGTGTC
GGCTTTGACAGGATCATATGG                                       
gtaatgctgctgatcttggtggcat..........cgtgtggtggtgttgtttgatgcag
CTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGATTGCATCAG
GAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG            
gtgagaactagatctttcccccttc..........attttaatggtttttgtttccccag
GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCTTTGCTGAA
CCCTACATCAGCAGAGCCCATGGTGTGGCCATCCCCACTTAAGTTCATCAGTGAGCTTGA
ACCAGAAGCTAAGGCTCTCCTGGAAGCAGCTCTGATGGAAGCCAACAGGGAGAGGGAGAA
GAAAATCCTGAATGGCACAAAGTACTCCCTGCCATCCCCTTCGCCCGGTGATGACAGTGC
CGATGACGATGCATGCTCAGAG                                      
gtatttgagtgctgaacaatttcag..........ggctgtgttgatcatttgggcacag
GTGAGCGACACGGAGCTCTGCTGCATCTGCTTCGACCAGGCTTGCACCATTGAGGTGCAA
GACTGTGGACATCAAATGTGTGCACCGTGCACGCTGGCACTGTGCTGTCACAACAAACCC
AATCCGACGACCCTGACACCGCCCTCACCGGCCTGCCCATTCTGCCGGGGCAGCATCTCA
CGGCTGGTGGTGGCCCAAACAAGGTCTGCTTGTGATCCTGACAAGCCGTCATCCCCGCAG
CTCACCCGGAAGCGGTCGCGTCGATCTCACAACCTCAGTGAGGGCAGCAGCAGCTTCAAA
GGTCTATCTTCGGCCATGGGCTCCTTCTCAAAGCTTGGCCGTGGCTCGAGCCGCATGGCG
GACAGTGACAGCAGCAACCTGGACAAGCCTGAGCACGATCTATGA               
aagcagaacaacgcatggacaattgccgcatcattctcaaaacatccgtt..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........cgccacccactgcgccttcgccggcggcggaggaggagggaggtgcggcc
1	OBART05G00890.1.exon1	563,135	562,896	0	0	240	ATGGGTCACGGTGTCAGCTGCGCCCGCACCGGCGACGAGCACGACTTCTTCCGGGCGGCG CAGCTCGGCGACCTCGACGCCCTGGCCGCCCTCCTCGCCGCCGACCCTTCCCTCGCCCGC CGCGCCACCCTCTACGACCGCCTCTCCGTCCTCCACATCGCCGCCGCCAATGGCCGCATC GAGGTCGCTCACCTCACTGCTTCTTCTTCTTCTTCTTCCCTCGGTCTCCGGGACTTGCTT
	Intron 1-2	562,895	562,852			44	gtctcaccctttctctcttgttttctttcttcttcttcttccag
2	OBART05G00890.1.exon2	562,851	562,792	0	0	60	GTGCTCTCCATGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAG
	Intron 2-3	562,791	562,628			164	gtgcgagatccccaccaaaatctct..........tgctcttcttctgcttatgctgcag
3	OBART05G00890.1.exon3	562,627	562,556	0	0	72	ACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAACTCCTCCAG GCCGACGCAAAT
	Intron 3-4	562,555	562,466			90	gtgagagaaaagaactgcaaaatca..........agtaacagttacgatttcgcaccag
4	OBART05G00890.1.exon4	562,465	562,344	0	2	122	ATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCGTACTACGGC CACGTCGACTGCCTGCAGGCCATCCTCGCCGCCGCGCAGACCACGCCGGTGGCCGACTCA TG
	Intron 4-5	562,343	562,247			97	gtgagatcatcctcatcctgtcgtg..........acttgctgctgtcgaagcttggcag
5	OBART05G00890.1.exon5	562,246	562,106	2	2	141	GGGTTTCGCCCGGTTCGTCAACGTCAGGGACGACCACGGCGCCACGCCGCTGCATCTCGC GGCCAGGCAGGGGCGGCCGGGGTGCGTGCAGGTGTTGCTGGAGAACGGCGCCATTGTGTC GGCTTTGACAGGATCATATGG
	Intron 5-6	562,105	561,993			113	gtaatgctgctgatcttggtggcat..........cgtgtggtggtgttgtttgatgcag
6	OBART05G00890.1.exon6	561,992	561,885	2	2	108	CTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGATTGCATCAG GAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG
	Intron 6-7	561,884	561,590			295	gtgagaactagatctttcccccttc..........attttaatggtttttgtttccccag
7	OBART05G00890.1.exon7	561,589	561,328	2	0	262	GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCTTTGCTGAA CCCTACATCAGCAGAGCCCATGGTGTGGCCATCCCCACTTAAGTTCATCAGTGAGCTTGA ACCAGAAGCTAAGGCTCTCCTGGAAGCAGCTCTGATGGAAGCCAACAGGGAGAGGGAGAA GAAAATCCTGAATGGCACAAAGTACTCCCTGCCATCCCCTTCGCCCGGTGATGACAGTGC CGATGACGATGCATGCTCAGAG
	Intron 7-8	561,327	561,203			125	gtatttgagtgctgaacaatttcag..........ggctgtgttgatcatttgggcacag
8	OBART05G00890.1.exon8	561,202	560,798	0	0	405	GTGAGCGACACGGAGCTCTGCTGCATCTGCTTCGACCAGGCTTGCACCATTGAGGTGCAA GACTGTGGACATCAAATGTGTGCACCGTGCACGCTGGCACTGTGCTGTCACAACAAACCC AATCCGACGACCCTGACACCGCCCTCACCGGCCTGCCCATTCTGCCGGGGCAGCATCTCA CGGCTGGTGGTGGCCCAAACAAGGTCTGCTTGTGATCCTGACAAGCCGTCATCCCCGCAG CTCACCCGGAAGCGGTCGCGTCGATCTCACAACCTCAGTGAGGGCAGCAGCAGCTTCAAA GGTCTATCTTCGGCCATGGGCTCCTTCTCAAAGCTTGGCCGTGGCTCGAGCCGCATGGCG GACAGTGACAGCAGCAACCTGGACAAGCCTGAGCACGATCTATGA
	3' downstream sequence						aagcagaacaacgcatggacaattgccgcatcattctcaaaacatccgtt..........

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Transcript: OBART05G00890.1

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