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    Oryza barthii (O.barthii_v1) ▼

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    Transcript: OBART03G14320.1

    Location

    Chromosome 3: 9,885,961-9,891,661 forward strand.

    About this transcript

    This transcript has 7 exons, is annotated with 33 domains and features and maps to 32 oligo probes.

    Gene

    This transcript is a product of gene OBART03G14320 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OBART03G14320.12788898aa
     
    Protein coding
    		A0A0D3FHH1 Ensembl Canonical
    -OBART03G14320.23465792aa
     
    Protein coding
    		A0A0D3FHH2 -
    -OBART03G14320.32926795aa
     
    Protein coding
    		A0A0D3FHH3 -

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
    Markup
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........tgaatgagccatttcggattttcctttttatgaaaaccttctttgtttag
    1OBART03G14320.1.exon19,885,9619,886,015--55 
    TTCATTACTTCCAAATTCTACCAAGAGTTGCCCTGCAGAGCTTACAGGCGGTCAG
     Intron 1-29,886,0169,886,09681 
    gtagttgcttcttatgttccttcca..........actgtactttctgtgagcactgaag
    2OBART03G14320.1.exon29,886,0979,886,159-263 
    ATCACTTAAAATTCACTCTTCTATTGAACCGGTGATGATGGAGGGCCCCGGCACTCTACT
GAG
     Intron 2-39,886,1609,886,959800 
    gtaagcagttgaaatctccagaggg..........ttcctactagtgctgcagcctgcag
    3OBART03G14320.1.exon39,886,9609,887,14121182 
    GCTCGAGTCCTGCCCTGTCCATGGAGCAGGTAAAGCTACTGCAACTCTGCGAGTACTCGG
GTCGGGCACAAGGCGATGCCGTCAGATTCCAGCAAGGGAAGGGAGAAAAAACGAGGGCCG
GCCGATGCGCTCCGAAACGGAGCAATCCGCACGTCTCCTTTTCCGGCTCCCCGACGAGTC
AC
     Intron 3-49,887,1429,887,721580 
    gtacacgtcagtctccaccaccacc..........ttcaaacccacggggtaaccactag
    4OBART03G14320.1.exon49,887,7229,887,8171196 
    GCGCTGGAAAGGGAAACCACCAGATAAGCTCTGGAGCTGGTATTGGATTAGTGGGTGGTG
GTGGTGGTGGTGCGAGGCCGTCGCTGGGCGGTGCTG
     Intron 4-59,887,8189,887,942125 
    gttttctcgcgcggctggtgcgatc..........tttttttcttcctcttggtgtgtag
    5OBART03G14320.1.exon59,887,9439,889,378101,436 
    GGATGGGGAAGGGAGGGGAAGGGGCGGTTCCCGTGGGGGAGAGCGGCGGGCGGCGGCGGA
GGAGGCCGGGCGAGGACGGAGGCGACGACGACGACGAGGAGTATGTGGTGGAGGAGGATG
AGGAGGAAGAGTGCGACGAGGATCTGTCTGCCTCGAGCGCCGGCGAGGGAGGAGAGGGCA
CAGACGAGGAATACGAAGAGGGTGATGAGGACGAAGAGGAGGATGAGACCCCGCGGCCGA
GGCAGCCTGTCAAGAGCCGCGAGAATGGGCGGAAGGGGAAGGCAGACCCACCCGTTGCGC
GATCTCGTCGACGTAAGTACGAGGATGACGATGACTACTCGGAAGAAGAAGACGATGGGG
TCGACGAGTACGGCGAGGATCTTGAGGAGGAAGAAGAGGAGGACGATGAGGCGCCACGAT
CCAAGCGCATGAAGAAACGTGGTGGCCGCAACGTGGAGGGGAAGCTTCCTCTGGAGCGAT
CAAATCGCCGGAGGTATGAGGAGGACATGGACTTTGACCCTGACATGGATGAGGAGGAAG
AGGAGGAGGATGTTGATTTCGATCCTGAAGTGGAGGACGAGGAGGAAGAAGATTTTGAGG
ATGAGGAAGATGATGAATTGGAAGCGACTAAGGTGAGGGTTAAGAATATGGGGCGGCGAA
AGTCTGCTTTGAATCAGCGACGAGGGAAGATGAAGAGCAGCTCTAAGGTGGCCAGTCGGA
AGGTGGGTTCAGTCAAGGCAAGGAACGCTGCTTCTATAAGACGGAGGCAGAAAAAACGTT
CAATGCTTGATCGTTATGAGGATGACGACTTCATTGTGGAGGACGAGGTTACGGCTGATT
GGCAACCAAGGAAAAAGGCTAGAATTAGGAAGCAGATGGAGGTTGATCCTCCGACACCAG
TTTTTGAGGCTGAGATATGGCCTACTATTGATTCAGACACGACAGACTTCGAATTTGTAA
CATCCGATGAGGAAGCAGCCATTGCTGAGCCTACTAGGGTTATTAAGAAGGGGAGGAAGA
AAAGGGTATTTGTGTCAGATTCATCCTCAGATTCTGAATTCGTTGTATCAGATAAGGAAT
TGGGGAATTTGAAGGAGTCTGAGCCTCCAGAGTCTCTGAAAGTGCTGCCTTCATCACCCA
GGAAGATTTCTGTTACAGGTAATGGGGAGCACAAGGGGAAGGAGAAAAAGGAACCACAGG
AGGCTGGAAGGGCAACGTGCGGGATTTGCCTTTCTGAAGAACAGAGAGTGACTGTGCAGG
GTGTGCTGGATTGCTGTTCACACTATTTTTGCTTTGCATGCATCATGCAATGGTCTAAGG
TTGAGTCAAGGTGTCCGTTGTGTAAACGGCGGTTCACAACAATCACAAAGTCGTCAAAGG
AGGATACTGGTTTGGAACTGACAAATTCTGTAATTAGGGTTGAAGAACGTGATCAG
     Intron 5-69,889,3799,890,208830 
    gtaacctttccttgctgcggttgtc..........atgctgtctcttgatttttgcacag
    6OBART03G14320.1.exon69,890,2099,891,14501937 
    GTTTATCAGCCTACGGAAGAGGAAATAAGACGTTGGCTAGATCCATACGAGAATGTTGTG
TGCATAGAGTGCAATCAAGGTGGTGATGACAGTCTCATGTTACTATGCGATATTTGTGAC
TCCTCAGCACATACTTACTGTGTTGGTTTGGGAAGAGAAGTACCTGAAGGAAATTGGTAC
TGTGGAGGTTGTAGACTCGATGGCGAAGCACATTCATACCATAATCATGTGAATGGCAAT
TCTGGGATGTTTGGTGCAATTTCACCAATTGGCACTTTTGAAAGGCAGGGGATTGATCTA
AATGTATCTCCAAGAGAGATTCCTAGGGGAAATCATTCTGTTGAGTCTCAAGCTTCTACT
GCAGGAGCATCAACTCCATCTGGAAGGCAGACAAACGCAACGAATTTTAGAAGACGTCAA
ATGCATGACTGGATACGCAGTTTGCTTTCTAGACCAAGGACAACACTTGGGCCAGTTATG
CATCATAATGGTGTGCATCAGAGTGGTTTTGTACCAAGCACTGAACCAGACCACATGAAC
TTTTGCGCACCATTAGAATCTGACACTTTACACAACACTGGGTCTGTACCACGAAGTGAA
CCAAGCCAGAACTTCCATGTTATGTCAGAAGCCAACACTTCAGAGACTTCCTTTGGAAGG
CATGCAGCTCTTTCTGAAAGACGTCAAATTTATGAACGTTTTTTCATGTTGCTATCTAGA
CCAAGCCCGACTATTAGACCGGACTTGTGCCATAATGCCTCAGAGCATGGTAGTTCTATA
CCAAGAGTTGAACCAAACCACATGAACTTTCATGCTCCGCCAGTAGCCAACAGTCCACAA
ACTCTGCTTGATGGCATTCCAAACCGCAGCAATGGTTTTTCTTTTACTCAGGCTCACAGT
AATTTTGTAGATGGAAACAACTTCCAAGGAACTGAAG
     Intron 6-79,891,1469,891,642497 
    gtgtctagagcaacagcaacttgtc..........tctgctgttactgccatttgttcag
    7OBART03G14320.1.exon79,891,6439,891,6611-19 
    TCGTAAAGGCGACCTAAAA
    3' downstream sequence 
    gatcacacaacggccaagataatttggatagcttagaatgtatagattgt..........

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