Oryza barthii (O.barthii_v1) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 2: 24,956,207-24,961,922 forward strand.
This transcript has 14 exons, is annotated with 15 domains and features and maps to 43 oligo probes.
This transcript is a product of gene OBART02G28690 Show transcript tableHide transcript table
.
| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........atcccgccgcgtcgtcagttttaacgcgccccccgccccgcctccgtttc
| ||||||
| 1 | OBART02G28690.1.exon1 | 24,956,207 | 24,956,525 | - | 0 | 319 |
AAACCCAAAATATTTCCGCCCCCTCCTCACCTCCCAAATCTTCCTTTCCCTCCTTCCTCC TCCTCCTCCTTCCCACCCAACGATTTGCCCTACTTTTTTTGCTTTCCCCCGCCGCCGCTG CGATTAGTCTCCGATCTCAACCAATCGACCAACCAAAGCCTTCCCCTCTCCATCGATTCA GCAGCCGCGGGCGAGCACGCACCAAACCGCCACCTACCGCCCCTCCCCGCGAGCGAAAAC CCTAGCGCGCCCTCGCCCTCGCATGGCGGACCAGGACGGCGCCGCGGCCGTGAGCGAAGC GGAGGCCGCCCCTGTTCAG |
| Intron 1-2 | 24,956,526 | 24,957,183 | 658 |
gtgagatcctccggtctgcttgctt..........ttatttctgacaattgagttcttag
| |||
| 2 | OBART02G28690.1.exon2 | 24,957,184 | 24,957,267 | 0 | 0 | 84 |
GTTGAAACTGGTGCTGAAAGTGGGGATGCTGAAAGTGAGCAGTACCAACCATTTTTCTCC ATGTGCCAGCTGATTCGCTCTGTT |
| Intron 2-3 | 24,957,268 | 24,957,401 | 134 |
gtaagatgttaacctgacttccttg..........gtcggtttcctggttttgcctgcag
| |||
| 3 | OBART02G28690.1.exon3 | 24,957,402 | 24,957,425 | 0 | 0 | 24 |
AGCTATTCAAATTCCTGGGATATG
|
| Intron 3-4 | 24,957,426 | 24,957,550 | 125 |
gtttgtgcccccacaattaagagta..........ttaatatgcttcttctcatacgcag
| |||
| 4 | OBART02G28690.1.exon4 | 24,957,551 | 24,957,625 | 0 | 0 | 75 |
AGCAACTTGGATTCGATGGATGATAAATACATGCTGAGTGCACCTTGGCCTGAAAATGGG CAGCCCCAGTCTGAG |
| Intron 4-5 | 24,957,626 | 24,958,235 | 610 |
gtatttgctaacctttctaagaata..........tttttttcttgttcctttttttcag
| |||
| 5 | OBART02G28690.1.exon5 | 24,958,236 | 24,958,310 | 0 | 0 | 75 |
AATGACATGGATTTGTTAGATGGGGATACAAATATGCAGTCTGAACCCCTCAGCACAGAG CAGCCTAGCTCCAAT |
| Intron 5-6 | 24,958,311 | 24,958,350 | 40 |
gtaattttctatctatttgatcttctctggccctttgtag
| |||
| 6 | OBART02G28690.2.exon6 | 24,958,351 | 24,958,443 | 0 | 0 | 93 |
GCATGTGACCCAGTTATATGTTTAATGGTGCACACAATAAGCCTTGAACTGAAATATCTT ATCCAACTATTCTACATAAACTGTGATAACCAG |
| Intron 6-7 | 24,958,444 | 24,958,484 | 41 |
gtgcctagagctccctaatattattgttggtggtgctgcag
| |||
| 7 | OBART02G28690.1.exon6 | 24,958,485 | 24,958,562 | 0 | 0 | 78 |
GATGAAATAGATATCTGGGATGGGAAAACTAAGCAAGACTCATCATCCCTTCTTGACAGC AAGCTGTACAACTCCGGC |
| Intron 7-8 | 24,958,563 | 24,958,842 | 280 |
gtaagtggcttcacaatcacaccta..........ttggattgataaaaatgtttaacag
| |||
| 8 | OBART02G28690.1.exon7 | 24,958,843 | 24,958,920 | 0 | 0 | 78 |
AGCGGCGCTGAACCTTGCAACATGGAGGGCCAACAATTTTCTTTGTCCTTTTCCCGCAAC ACTCAATCTCAATTGGTG |
| Intron 8-9 | 24,958,921 | 24,959,234 | 314 |
gtatgttttatgcaatatcttcaac..........aaaaaaaactgttggtctcctgcag
| |||
| 9 | OBART02G28690.2.exon9 | 24,959,235 | 24,959,298 | 0 | 1 | 64 |
ATGATAAAGATGGTTTCTGTTCATTCTGTGCTCTTAAAGAACATATTGATGAATCAATCC GAAG |
| Intron 9-10 | 24,959,299 | 24,959,624 | 326 |
gtctggatctgttataaggccagtg..........attagtggtggagttccttgacaag
| |||
| 10 | OBART02G28690.2.exon10 | 24,959,625 | 24,959,806 | 1 | 0 | 182 |
ATTACCCAGAATTATCATCAGATTTTAGACCAGGACAACAGGAGGATGCACATGAGTTCC TACGTTGTTTGCTGGACAACCTGGATAAGTGCACCACTGATCCCAAGCCAAAGAATAAGC CCTCATCTTTTGATGAAGAAAGTATTGTTAAGCAGGTTTTTGGAGGCCGACTAAAAAGCA AG |
| Intron 10-11 | 24,959,807 | 24,959,879 | 73 |
gtattttactttgtcatcatgcttg..........aactgaattcattctgtctatctag
| |||
| 11 | OBART02G28690.1.exon11 | 24,959,880 | 24,960,215 | 0 | 0 | 336 |
TTGACTTGCTGTGAGTGTGGACACTGCTCGGAGACATATGAGCCCTTCTTGGATCTTAGC CTGGAGATTGATCAGGCTGATAACCTTATTGATGCCTTGGAATCTTTTACCAAGTTGGAG CGAATTGGGGATGCTGAGGACAAGCTGAACTGTGAACATTGTAATGCAAAAGTTTGTAAG AACAAGCAACTTATGCTTGATAGATCACCAGATGTCGTTGCCATTCATTTAAAGCGTTTC ACCAGCCTTGATAGATCTGTTGAAAAGATTGACAAACATGTGGTGTACCCACTAGAACTT GATTTGAAGCCATTCCATTGTGATCCTGACATCAAT |
| Intron 11-12 | 24,960,216 | 24,960,298 | 83 |
gtgagtttttctactatctctattt..........gttttacttgtcccaccttatgcag
| |||
| 12 | OBART02G28690.1.exon12 | 24,960,299 | 24,960,418 | 0 | 0 | 120 |
AAGGAGCTGAAATATGATCTTTATGGCGTTGTTGAGCATTCTGGTTCACCTAGCTATGGC CATTATGTTTGTTCTGTTCGTTCTTCACCGAGCACTTGGCATCTAATGAATGACTCCCAT |
| Intron 12-13 | 24,960,419 | 24,960,585 | 167 |
gtatgtgtcacaagttacttgctat..........taacctctgcaaacctttgttgtag
| |||
| 13 | OBART02G28690.1.exon13 | 24,960,586 | 24,961,075 | 0 | 1 | 490 |
GTTGATTTGATTAGTGAGGCAAGCGCGCTGAACCAGGAAGGGTATATTCTGTTTTATATT AGGCAGGGCAAATTTCAGTGGTTTTCAAGTTTGCTGGAGCAAAAGGATGACCTGCATCCT GAAAATACGAGTGGTGCATCTCCCGTTTCAGTATTGGAGAATATAGATGTGGATTGTCCA ACATCCTCTGGTGAAGCAACCAACAGTTCTGGTGATAAATTAGAGAAAGATGAAACTAGT CAATGCAAAACATCTTTCCTTGAGGAGCCAGCTAAGGGATGCCCGATTGATGCTATCAAC AAGGCTGACCTAAAAGATGAAATCGTGCCATGCATATCATCTCATCACGATTGTGTGGCT ATTAGGTGTCCTGGTAGTGCTGCTGACATTACCAATTTGGACAGACCCTCAACTCCTTCG CCAAAACGCAAGCGTTTCTTCTCTGATGATAATGAGTTTAATGTGTTTGAGTTTGAGGAC TTCGGTGATG |
| Intron 13-14 | 24,961,076 | 24,961,391 | 316 |
gtaagtcctacatcttggttccatt..........acatttctgcttgtgccatttgcag
| |||
| 14 | OBART02G28690.1.exon14 | 24,961,392 | 24,961,922 | 1 | - | 531 |
AAGATGAGACCCCTCTGCTTGGAAACCTTAAATTCACATCAAAAGCTAAGAAGGCTAAGG TTGAATCAGCATCTAAATCGACGAAGGGCCCTTGCATAGATAAGAACGTAACACGATTAG TAAGGAGTATGCCGTCCACTCGGAGAAAAGGCATTGTGGACTGCTTGAGCCAACTCAATG CAGAGCAGGATTCTGGAAGCTGTCCTCGGAGTCACCCTCTTGGCAAAAAGAAACTCGGCA TCCCGGTTCCAATCAAATGGTAGCATGGTCCGAGTGCCGAAGCCTTTTTTTTTTTTTCCA GCTGTACATGTTAGTTTAGCATGCATTTTGTTTTATATCCAGAACCAACAAATTTTATCT GCTTGTCAACCTGTATGACCGGCTAGATGGTGATAGTGAGGTACATTTTTGCTGCCTTCT GATGTGGAATGCCTCACCTATATGTATGGAACATGCACTCGGAGTCCCACTTCATTTGTG AAAAACAGTGGCAAAGGGAAGAGACTAAAAACTGAGGAGTTTTGTGTGGGC |
| 3' downstream sequence |
cggtgccgttcttcttcaacagcgaattatccaccaaacgcatccgtgta..........
|
.
Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
.
.
![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
![[twitter logo]](/i/twitter.png "Follow us on Twitter!")
