Oryza barthii (O.barthii_v1) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 1: 28,733,793-28,737,287 reverse strand.
This transcript has 7 exons, is annotated with 16 domains and features and maps to 41 oligo probes.
This transcript is a product of gene OBART01G34370 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........cccgccctctctccttccttccggccatcgcggcggcgcggctgccggcg
| ||||||
| 1 | OBART01G34370.1.exon1 | 28,737,287 | 28,737,263 | 0 | 1 | 25 |
ATGAGCGGCGGGCTCCCCGGATTCC
|
| Intron 1-2 | 28,737,262 | 28,737,103 | 160 |
gtacgccatctctctcccgcccccc..........gatttttttttttttggcctcgcag
| |||
| 2 | OBART01G34370.1.exon2 | 28,737,102 | 28,736,979 | 1 | 2 | 124 |
ACAATGCGCCGGTGTCGAGGGCCGTGGTGGTCGCCGCCGCGCTCTTCTCCGTCGCCTTCG GCTTCCGCGGCCGCTTCCTCGACCTCGGCCTCTCCTACGAGGCAAGTCTCCCTGCCCCTA CCCG |
| Intron 2-3 | 28,736,978 | 28,736,744 | 235 |
gtgctcgtagcctcgcactagatcc..........gggatcttatacaatgttgctttag
| |||
| 3 | OBART01G34370.1.exon3 | 28,736,743 | 28,736,563 | 2 | 0 | 181 |
ACAGCTGATGAGGTTACCCTTACCATCCCTTCCAATGCAGAATGTTTATGGAAAGCTGCG GATTTGGAAGCTGATCACCTCGTTGTTTGCTTTTTCATCAACGCCTGAACTTATCTTTGG AGCTGCCTTGCTGTACTACTTTAGGGTGTTTGAACGGCAAATAGGTTCAAACAAGTATTC T |
| Intron 3-4 | 28,736,562 | 28,736,478 | 85 |
gtaagtggttcttgtgcctaagatg..........ttgatgagcttatttaaacatgtag
| |||
| 4 | OBART01G34370.1.exon4 | 28,736,477 | 28,736,411 | 0 | 1 | 67 |
GTTTTCATAGTCTTCTCCACAGCGGTGTCCGTACTGCTTCAGATCCTTTCTTTGGCTTAC CTGAAAG |
| Intron 4-5 | 28,736,410 | 28,735,504 | 907 |
gtatgattttgcctttagctttctt..........tgacatgttaatgcttggagtgcag
| |||
| 5 | OBART01G34370.1.exon5 | 28,735,503 | 28,735,352 | 1 | 0 | 152 |
GTCCTTCTTTAAATCCATTGACATCTGGGCCATATGGCCTCATATTTGCGTCTTACATAC CATTCTTCTTTGACATTCCAATCACAACAAAGTTTCGCATATTTGGGTTGCGCTTAAGTG ACAAGTCATTCATATATTTGGCAGGACTCCAG |
| Intron 5-6 | 28,735,351 | 28,735,262 | 90 |
gtcaattctaacttccatgataact..........tagcttatgtatcttcgattttcag
| |||
| 6 | OBART01G34370.1.exon6 | 28,735,261 | 28,735,160 | 0 | 0 | 102 |
CTACTTTTCTCATCTGGATGGCGTTCAATTATACCTGGACTTTCTGGTATACTGGCTGGG CTTTTGTATCGTCTGAATATATTTGGCATCCGCAGGTTGAAG |
| Intron 6-7 | 28,735,159 | 28,733,949 | 1,211 |
gtaaactaacttctttctagaactg..........ctcttattattgttatcatatccag
| |||
| 7 | OBART01G34370.1.exon7 | 28,733,948 | 28,733,793 | 0 | 0 | 156 |
GGTGTGCACCCAACTACAGAAGATCCAATGGAGTCTTCAATCGCTACACTTGTTTCCATG GGTTTTGATCGTGGTTCTGCAATACGGGCTCTTGCACTGACAAATTATGATGTTAATTTG GCCTCAAACATTCTTCTTGAAGCACAATCCATGTAG |
| 3' downstream sequence |
aaaattatcgtccggagcaaaagattctatgcctcgtaaattaaaggatg..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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