Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: OBART12G08950.1

.

Location

Chromosome 12: 8,176,388-8,181,634 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 30 domains and features and maps to 34 oligo probes.

Gene

This transcript is a product of gene OBART12G08950 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OBART12G08950.2	1892	559aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3HTF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OBART12G08950.1	1853	546aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3HTF1	-

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	496	542	-	SSF57850	-
Pfam	501	541	-	PF13920	-
Pfam	219	432	Copine, C-terminal	PF07002	IPR010734 [Display all genes with this domain]
PANTHER	120	537	E3 ubiquitin-ligases/Copine domain-containing protein	PTHR45751	IPR052079 [Display all genes with this domain]
PROSITE profiles	503	536	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	488	546	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Superfamily	195	378	von Willebrand factor A-like domain superfamily	SSF53300	IPR036465 [Display all genes with this domain]
SMART	194	397	von Willebrand factor, type A	SM00327	IPR002035 [Display all genes with this domain]

Other features

Show entries

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
MobiDBLite	45	111
MobiDBLite	71	84
MobiDBLite	126	136
MobiDBLite	126	162
MobiDBLite	148	158
Phobius	1	13
Phobius	1	43
Phobius	14	25
Phobius	26	43
Phobius	44	546
Seg	14	23
Seg	35	67
Seg	69	86
Seg	95	104
Seg	114	136
Seg	148	158
Seg	396	407
SignalP GRAM POSITIVE	1	43
TMHMM	5	27
Alphafold	1	546
Alphafold	1	546
Alphafold	1	546

.

Personal Data