Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: OBART09G12440.1

.

Location

Chromosome 9: 13,560,904-13,562,935 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 18 domains and features and maps to 35 oligo probes.

Gene

This transcript is a product of gene OBART09G12440 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OBART09G12440.1	794	140aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3H7K9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	1	76	-	cd01803	-
Gene3D	1	81	-	3.10.20.90	-
SMART	84	135	Large ribosomal subunit protein eL40 domain	SM01377	IPR001975 [Display all genes with this domain]
Pfam	85	133	Large ribosomal subunit protein eL40 domain	PF01020	IPR001975 [Display all genes with this domain]
Gene3D	84	134	Large ribosomal subunit protein eL40 superfamily	4.10.1060.50	IPR038587 [Display all genes with this domain]
PANTHER	1	94	Ubiquitin and ubiquitin-like	PTHR10666	IPR050158 [Display all genes with this domain]
PROSITE patterns	27	52	Ubiquitin conserved site	PS00299	IPR019954 [Display all genes with this domain]
Prints	11	31	Ubiquitin domain	PR00348	IPR019956 [Display all genes with this domain]
Prints	32	52	Ubiquitin domain	PR00348	IPR019956 [Display all genes with this domain]
Prints	53	74	Ubiquitin domain	PR00348	IPR019956 [Display all genes with this domain]
SMART	1	72	Ubiquitin-like domain	SM00213	IPR000626 [Display all genes with this domain]
PROSITE profiles	1	76	Ubiquitin-like domain	PS50053	IPR000626 [Display all genes with this domain]
Pfam	3	74	Ubiquitin-like domain	PF00240	IPR000626 [Display all genes with this domain]
Superfamily	1	76	Ubiquitin-like domain superfamily	SSF54236	IPR029071 [Display all genes with this domain]
Superfamily	85	136	Zinc-binding ribosomal protein	SSF57829	IPR011332 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
Seg	67	80
Alphafold	1	140
Alphafold	1	140

.

Personal Data