Ensembl Genomes HomeEnsembl Plants HomeEnsembl Plants Home ▼
More ▼
    Search »
    Oryza barthii (O.barthii_v1) ▼

    Favourite species

    All species

    Recent locations

    Transcript-based displays

    Configure this page

    Custom tracks

    Export data

    Bookmark this page

    Transcript: OBART07G15130.2

    Description

    chromatin remodeling 4 [Source:Projected from Arabidopsis thaliana (AT5G44800) TAIR;Acc:AT5G44800]

    Location

    Chromosome 7: 14,615,267-14,627,339 reverse strand.

    About this transcript

    This transcript has 12 exons, is annotated with 67 domains and features and maps to 51 oligo probes.

    Gene

    This transcript is a product of gene OBART07G15130 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OBART07G15130.267212232aa
     
    Protein coding
    		A0A0D3GR93 Ensembl Canonical
    -OBART07G15130.366402211aa
     
    Protein coding
    		A0A0D3GR94 -
    -OBART07G15130.165712188aa
     
    Protein coding
    		A0A0D3GR92 -

    Domains & features

    Domains

    Show/hide columns
    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
    Download what you seeDownload whole table
    Domain sourceStartEndDescriptionAccessionInterPro
    CDD79120-cd15532-
    PANTHER1652122-PTHR45623-
    Gene3D471569-2.40.50.40-
    CDD509568-cd18660-
    Gene3D570614-2.40.50.40-
    Gene3D16421748-1.10.10.60-
    CDD16861730-cd11660-
    Superfamily520571Chromo-like domain superfamilySSF54160IPR016197 [Display all genes with this domain]
    Superfamily575613Chromo-like domain superfamilySSF54160IPR016197 [Display all genes with this domain]
    SMART344572Chromo/chromo shadow domainSM00298IPR000953 [Display all genes with this domain]
    PROSITE profiles511579Chromo/chromo shadow domainPS50013IPR000953 [Display all genes with this domain]
    SMART12431308Domain of unknown function DUF1087SM01147IPR009463 [Display all genes with this domain]
    Pfam12511301Domain of unknown function DUF1087PF06465IPR009463 [Display all genes with this domain]
    SMART647851Helicase superfamily 1/2, ATP-binding domainSM00487IPR014001 [Display all genes with this domain]
    PROSITE profiles663840Helicase superfamily 1/2, ATP-binding domainPS51192IPR014001 [Display all genes with this domain]
    Pfam9671081Helicase, C-terminal domain-likePF00271IPR001650 [Display all genes with this domain]
    PROSITE profiles9701129Helicase, C-terminal domain-likePS51194IPR001650 [Display all genes with this domain]
    SMART9961081Helicase, C-terminal domain-likeSM00490IPR001650 [Display all genes with this domain]
    Superfamily16811732Homedomain-like superfamilySSF46689IPR009057 [Display all genes with this domain]
    Superfamily638875P-loop containing nucleoside triphosphate hydrolaseSSF52540IPR027417 [Display all genes with this domain]
    Superfamily8771135P-loop containing nucleoside triphosphate hydrolaseSSF52540IPR027417 [Display all genes with this domain]
    Gene3D8851112P-loop containing nucleoside triphosphate hydrolase3.40.50.300IPR027417 [Display all genes with this domain]
    PROSITE profiles16781730SANT/Myb domainPS50090IPR001005 [Display all genes with this domain]
    Pfam654943SNF2, N-terminalPF00176IPR000330 [Display all genes with this domain]
    Gene3D642884SNF2-like, N-terminal domain superfamily3.40.50.10810IPR038718 [Display all genes with this domain]
    CDD9651092SNF2/RAD5-like, C-terminal helicase domaincd18793IPR049730 [Display all genes with this domain]
    Superfamily73125Zinc finger, FYVE/PHD-typeSSF57903IPR011011 [Display all genes with this domain]
    PROSITE profiles76123Zinc finger, PHD-fingerPS50016IPR019787 [Display all genes with this domain]
    Pfam79120Zinc finger, PHD-fingerPF00628IPR019787 [Display all genes with this domain]
    SMART78121Zinc finger, PHD-typeSM00249IPR001965 [Display all genes with this domain]
    PROSITE patterns79120Zinc finger, PHD-type, conserved sitePS01359IPR019786 [Display all genes with this domain]
    Gene3D69123Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]

    Other features

    Show/hide columns
    • Feature type
    • Start
    • End
    Download what you seeDownload whole table
    Feature typeStartEnd
    MobiDBLite2544
    MobiDBLite131341
    MobiDBLite160169
    MobiDBLite172189
    MobiDBLite190199
    MobiDBLite207217
    MobiDBLite218227
    MobiDBLite244257
    MobiDBLite275284
    MobiDBLite314335
    MobiDBLite364442
    MobiDBLite374387
    MobiDBLite397406
    MobiDBLite427442
    MobiDBLite490516
    MobiDBLite12261245
    MobiDBLite12271237
    MobiDBLite13731408
    MobiDBLite14911510
    MobiDBLite19852232
    MobiDBLite20122036
    MobiDBLite20562067
    MobiDBLite20682080
    MobiDBLite21302141
    MobiDBLite21422153
    MobiDBLite21622175
    MobiDBLite22062217
    Seg137159
    Seg207221
    Seg307319
    Seg374387
    Seg796812
    Seg13121320
    Seg20562067
    Seg21622180

    This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Policy and Terms of Use

    I Agree