Oryza barthii (O.barthii_v1) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 6: 9,686,794-9,691,609 reverse strand.
This transcript has 8 exons, is annotated with 32 domains and features and maps to 22 oligo probes.
This transcript is a product of gene OBART06G11930 Show transcript tableHide transcript table
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| Domain source | Start | End | Description | Accession | InterPro |
|---|---|---|---|---|---|
| Superfamily | 270 | 336 | - | SSF57850 | - |
| CDD | 287 | 328 | - | cd16479 | - |
| PANTHER | 1 | 430 | HRD1 family E3 ubiquitin-protein ligases | PTHR22763 | IPR050731 [Display all genes with this domain] |
| Pfam | 289 | 328 | Zinc finger, RING-type | PF13639 | IPR001841 [Display all genes with this domain] |
| SMART | 290 | 327 | Zinc finger, RING-type | SM00184 | IPR001841 [Display all genes with this domain] |
| PROSITE profiles | 290 | 328 | Zinc finger, RING-type | PS50089 | IPR001841 [Display all genes with this domain] |
| Gene3D | 262 | 338 | Zinc finger, RING/FYVE/PHD-type | 3.30.40.10 | IPR013083 [Display all genes with this domain] |
| Feature type | Start | End |
|---|---|---|
| MobiDBLite | 335 | 371 |
| MobiDBLite | 394 | 422 |
| MobiDBLite | 394 | 434 |
| Phobius | 1 | 6 |
| Phobius | 7 | 23 |
| Phobius | 24 | 42 |
| Phobius | 43 | 61 |
| Phobius | 62 | 98 |
| Phobius | 99 | 119 |
| Phobius | 120 | 138 |
| Phobius | 139 | 157 |
| Phobius | 158 | 168 |
| Phobius | 169 | 193 |
| Phobius | 194 | 222 |
| Phobius | 223 | 244 |
| Phobius | 245 | 496 |
| Seg | 104 | 120 |
| Seg | 376 | 382 |
| TMHMM | 7 | 24 |
| TMHMM | 34 | 56 |
| TMHMM | 99 | 121 |
| TMHMM | 141 | 160 |
| TMHMM | 173 | 195 |
| TMHMM | 222 | 244 |
| Alphafold | 1 | 496 |
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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