Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OBART06G01870.3

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Location

Chromosome 6: 1,401,205-1,406,970 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 21 domains and features and maps to 51 oligo probes.

Gene

This transcript is a product of gene OBART06G01870 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OBART06G01870.1	1942	438aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3GCC6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OBART06G01870.3	1894	422aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3GCC8	-
-	OBART06G01870.2	1837	403aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3GCD3	-
-	OBART06G01870.4	1789	387aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3GCC9	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	23	55	-	PS50294	-
PANTHER	23	404	-	PTHR19854	-
PROSITE profiles	370	403	-	PS50294	-
Prints	42	56	G-protein beta WD-40 repeat	PR00320	IPR020472 [Display all genes with this domain]
Prints	87	101	G-protein beta WD-40 repeat	PR00320	IPR020472 [Display all genes with this domain]
Prints	389	403	G-protein beta WD-40 repeat	PR00320	IPR020472 [Display all genes with this domain]
SMART	16	55	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	19	55	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	23	64	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	58	100	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	275	314	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	321	360	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	363	402	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	366	401	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	370	403	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
PROSITE patterns	389	403	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	15	408	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	4	105	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]
Gene3D	136	413	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
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Feature type	Start	End
Seg	2	24
Alphafold	1	422

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