Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OBART05G22300.1

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Description

ubiquitin-specific protease 25 [Source:Projected from Arabidopsis thaliana (AT3G14400) TAIR;Acc:AT3G14400]

Location

Chromosome 5: 20,198,190-20,204,551 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features and maps to 62 oligo probes.

Gene

This transcript is a product of gene OBART05G22300 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OBART05G22300.1	2911	643aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3G9M5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	18	356	-	3.90.70.10	-
CDD	25	342	-	cd02661	-
Superfamily	16	341	Papain-like cysteine peptidase superfamily	SSF54001	IPR038765 [Display all genes with this domain]
Pfam	24	341	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PF00443	IPR001394 [Display all genes with this domain]
Gene3D	542	640	Transcription factor EnY2 superfamily	1.10.246.140	IPR038212 [Display all genes with this domain]
PANTHER	21	362	Ubiquitin carboxyl-terminal hydrolases	PTHR24006	IPR050164 [Display all genes with this domain]
PROSITE profiles	23	344	Ubiquitin specific protease domain	PS50235	IPR028889 [Display all genes with this domain]
PROSITE patterns	24	39	Ubiquitin specific protease, conserved site	PS00972	IPR018200 [Display all genes with this domain]

Other features

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End

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Feature type	Start	End
Seg	7	24
Seg	351	376
Seg	534	548
Seg	562	573
Alphafold	1	643
Alphafold	1	643

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