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    Oryza barthii (O.barthii_v1) ▼

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    Transcript: OBART05G00890.1

    Description

    E3 ubiquitin ligase, XA21-mediated disease resistanc [Source: Projected from Oryza sativa (Os05g0112000)]

    Location

    Chromosome 5: 560,798-563,135 reverse strand.

    About this transcript

    This transcript has 8 exons, is annotated with 33 domains and features and maps to 57 oligo probes.

    Gene

    This transcript is a product of gene OBART05G00890 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
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    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OBART05G00890.11410469aa
     
    Protein coding
    		A0A0D3G2G8 Ensembl Canonical

    Domains & features

    Domains

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    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
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    Domain sourceStartEndDescriptionAccessionInterPro
    PANTHER14402-PTHR24128-
    PROSITE profiles98125-PS50297-
    PROSITE profiles177202-PS50297-
    PROSITE profiles214240-PS50297-
    Superfamily335397-SSF57850-
    SMART1140Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
    SMART4694Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
    Pfam83154Ankyrin repeatPF12796IPR002110 [Display all genes with this domain]
    SMART98127Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
    PROSITE profiles98130Ankyrin repeatPS50088IPR002110 [Display all genes with this domain]
    SMART132161Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
    Pfam177206Ankyrin repeatPF00023IPR002110 [Display all genes with this domain]
    SMART177206Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
    PROSITE profiles177209Ankyrin repeatPS50088IPR002110 [Display all genes with this domain]
    SMART214243Ankyrin repeatSM00248IPR002110 [Display all genes with this domain]
    PROSITE profiles214246Ankyrin repeatPS50088IPR002110 [Display all genes with this domain]
    Pfam215245Ankyrin repeatPF00023IPR002110 [Display all genes with this domain]
    Gene3D6128Ankyrin repeat-containing domain superfamily1.25.40.20IPR036770 [Display all genes with this domain]
    Superfamily16270Ankyrin repeat-containing domain superfamilySSF48403IPR036770 [Display all genes with this domain]
    Gene3D129212Ankyrin repeat-containing domain superfamily1.25.40.20IPR036770 [Display all genes with this domain]
    Gene3D213275Ankyrin repeat-containing domain superfamily1.25.40.20IPR036770 [Display all genes with this domain]
    PROSITE profiles342391Zinc finger, RING-typePS50089IPR001841 [Display all genes with this domain]
    Gene3D324400Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]

    Other features

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    • Feature type
    • Start
    • End
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    Feature typeStartEnd
    MobiDBLite310330
    MobiDBLite403469
    MobiDBLite427458
    Seg1842
    Seg6583
    Seg286302
    Seg317338
    Seg428443
    Alphafold1469
    Ncoils292312

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