Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OBART02G14320.1

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Description

Transducin/WD40 repeat-like superfamily protein [Source:Projected from Arabidopsis thaliana (AT5G54520) TAIR;Acc:AT5G54520]

Location

Chromosome 2: 11,569,156-11,573,988 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 23 domains and features and maps to 40 oligo probes.

Gene

This transcript is a product of gene OBART02G14320 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OBART02G14320.1	1352	449aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3F4C8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	150	184	-	PS50294	-
PROSITE profiles	236	273	-	PS50294	-
PANTHER	4	436	WD repeat-containing protein	PTHR44566	IPR053053 [Display all genes with this domain]
SMART	143	183	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	147	183	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	150	184	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	188	227	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	192	227	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	195	236	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	230	269	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	232	269	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	236	278	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	272	318	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	367	408	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	373	408	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
Superfamily	142	432	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	132	440	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	78
MobiDBLite	46	72
Seg	38	72
Seg	89	107
Seg	208	218
Alphafold	1	449

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