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    Oryza barthii (O.barthii_v1) ▼

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    Transcript: OBART02G03080.1

    Location

    Chromosome 2: 1,911,386-1,922,527 forward strand.

    About this transcript

    This transcript has 18 exons, is annotated with 41 domains and features and maps to 64 oligo probes.

    Gene

    This transcript is a product of gene OBART02G03080 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OBART02G03080.159141672aa
     
    Protein coding
    		A0A0D3F0F7 Ensembl Canonical

    Domains & features

    Domains

    Show/hide columns
    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
    Download what you seeDownload whole table
    Domain sourceStartEndDescriptionAccessionInterPro
    CDD9931065-cd15614-
    Superfamily14801546-SSF57850-
    PROSITE profiles10831497CBP/p300-type histone acetyltransferase domainPS51727IPR031162 [Display all genes with this domain]
    PANTHER77482Histone acetyltransferase Rtt109/CBPPTHR13808IPR013178 [Display all genes with this domain]
    SMART11161404Histone acetyltransferase Rtt109/CBPSM01250IPR013178 [Display all genes with this domain]
    Pfam11241355Histone acetyltransferase Rtt109/CBPPF08214IPR013178 [Display all genes with this domain]
    Superfamily654726TAZ domain superfamilySSF57933IPR035898 [Display all genes with this domain]
    Gene3D658758TAZ domain superfamily1.20.1020.10IPR035898 [Display all genes with this domain]
    Gene3D15531669TAZ domain superfamily1.20.1020.10IPR035898 [Display all genes with this domain]
    Superfamily15561640TAZ domain superfamilySSF57933IPR035898 [Display all genes with this domain]
    Superfamily10261068Zinc finger, FYVE/PHD-typeSSF57903IPR011011 [Display all genes with this domain]
    PROSITE patterns9941065Zinc finger, PHD-type, conserved sitePS01359IPR019786 [Display all genes with this domain]
    Gene3D10171066Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]
    PROSITE profiles651721Zinc finger, TAZ-typePS50134IPR000197 [Display all genes with this domain]
    SMART653721Zinc finger, TAZ-typeSM00551IPR000197 [Display all genes with this domain]
    Pfam663718Zinc finger, TAZ-typePF02135IPR000197 [Display all genes with this domain]
    PROSITE profiles15571638Zinc finger, TAZ-typePS50134IPR000197 [Display all genes with this domain]
    SMART15581636Zinc finger, TAZ-typeSM00551IPR000197 [Display all genes with this domain]
    Pfam15651635Zinc finger, TAZ-typePF02135IPR000197 [Display all genes with this domain]
    SMART14981543Zinc finger, ZZ-typeSM00291IPR000433 [Display all genes with this domain]
    PROSITE profiles14991551Zinc finger, ZZ-typePS50135IPR000433 [Display all genes with this domain]
    Pfam15011542Zinc finger, ZZ-typePF00569IPR000433 [Display all genes with this domain]
    PROSITE patterns15041531Zinc finger, ZZ-typePS01357IPR000433 [Display all genes with this domain]
    Gene3D14981550Zinc finger, ZZ-type superfamily3.30.60.90IPR043145 [Display all genes with this domain]

    Other features

    Show/hide columns
    • Feature type
    • Start
    • End
    Download what you seeDownload whole table
    Feature typeStartEnd
    MobiDBLite134
    MobiDBLite1123
    MobiDBLite459469
    MobiDBLite459493
    MobiDBLite470491
    MobiDBLite528551
    MobiDBLite536551
    MobiDBLite875888
    MobiDBLite875901
    MobiDBLite889898
    Seg2433
    Seg122131
    Seg435449
    Seg458469
    Seg13481361
    Seg16421654
    Ncoils13331353

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