Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OBART02G02290.1

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Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A0D3F068]

Location

Chromosome 2: 1,329,864-1,333,426 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 20 domains and features and maps to 45 oligo probes.

Gene

This transcript is a product of gene OBART02G02290 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OBART02G02290.1	1047	308aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3F068	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	54	108	-	SSF57850	-
CDD	58	96	-	cd16571	-
Pfam	109	184	-	PF21361	-
Superfamily	113	305	-	SSF49599	-
CDD	174	302	-	cd03829	-
PANTHER	52	307	E3 ubiquitin-protein ligase SINA	PTHR10315	IPR052088 [Display all genes with this domain]
Pfam	60	95	E3 ubiquitin-protein ligase Sina-like, RING finger	PF21362	IPR049548 [Display all genes with this domain]
Pfam	204	301	Seven-in-absentia protein, TRAF-like domain	PF03145	IPR018121 [Display all genes with this domain]
Gene3D	174	301	TRAF-like	2.60.210.10	IPR008974 [Display all genes with this domain]
PROSITE profiles	60	96	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	55	102	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Gene3D	108	168	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
PROSITE profiles	113	173	Zinc finger, SIAH-type	PS51081	IPR013010 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Seg	40	54
Alphafold	1	308
Alphafold	1	308
Alphafold	1	308
Alphafold	1	308
Alphafold	1	308
Alphafold	1	308

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