5' upstream sequence
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]},"expect":[],"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"}}}},"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only"}
..........taatctaatataactatcgtgggatcaatcgaacgactgatacatttgca
1 rna5522-E1 46,239,609 46,238,093 - 1 1,517
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"legend":{"_messages":[],"exons/Introns":{"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"}}},"expect":[],"seq":[{"style":[2]},-5,{"style":[2,-3,1]},{"style":[1]},-17,{"style":[1,-16,0]}]}}
GTAGAGACGGAAGTAGAGCATATCACCGCTGAGGATCCGGAACCACCGCTCTATCTATCT CTCTCTAAAAAGTGTTCGGTGTTTGAACTTTTGAACCCAAATTTCGCACTCTACTTTGCA GTTACAACCTCTGCAACTCAATTTTCACTCTCCATTTCGCTATTTTGCTTAACCTTTCAC CTCATCATAGTATTCCCCAATTTCTTCAAAGGTAAGCAAAGTTTCCCCAAATCCTCAATT TAGGGTTTTTGAGAATTTCAATTTCTAGTAGTTTCTGCTCTTGATTGAATACAATTAGCC TCTTTGTTCAACTTGCATTGTTGTTTTGAATCTTCAATTTTCAATTTTGATTAATTTTCA TGTT ATGGGTAATGTTGAAATCCCTAATTGGCTTGAGGGGTTGCCACTGGCACCTGAATT TCGACCAACTGATACTGAATTTTCTGACCCAATTGCTTATATATCAAAGATTGAGCAGAA AGCTGGTAAATTTGGGATATGTAAGATTATCCCACCATTGCCCAAGCCTTCAAAAAAATA TGTTTTTTCTAATTTGAATAAGTCCCTTTTGAAGCGGCCTGAATTGGGGCCAGATGGTAG TTCTTTAGGTGCTGGTAATTCTTGGAAAATGGGTTCCGGGGATAGTGGTAATGATGGAGA GTCGCGGGCCTTGTTTACTACAAGGCAACAGGAAGTGGGACAAAATGTCAAAAAATCTAA AGGGGTAGTTCAGAAGTCAATGGCATGTGTCCATAAGCAAGTCTGGCAAAGTGGAGAGGT TTATACAATTGAACAGTTTGAGTCTAAATCGAAGACTTTTTCCAGAAGCGTTCTGGGTAC GGCGAAGGATGTTTCTCCATTGGTTGTAGAGTCCATGTTTTGGAAGGCAGCTTCAGAGAA GCCTATTTATGTGGAGTATGCTAATGACGTGCCTGGTTCGGCGTTTGGAGAATCACAGGG TCAATTTTATCGTAGTCATCGAAGGCAACGGAAAAGGACTGATTATAAGAGTAGGGTAGA TAGCTCTGTTTGTAAAGAAACTGAAATGGGTGGTGTAAATGATACACACAATAATGAGTC TAACGGCATTGCTTCCCCAAGTCATGCAGAATCGTGTTTAGAGACGTCTAAATCAGCTAT GACTCTGTCAACATCTACACCAAATGAGGTGTCGCAGCCTTCTAAGGAGATGATTTCAGA TGCTGACAATGACATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAATTT GCAAGTTATTCCTCGTGCTTCAGGCTCACTAACACGTTTCATGCCAGATGATATTCCTGG TGTTACTTCACCCATGATATACATTGGTATGTTGTTTAGTTGGTTTGCCTGGCATGTAGA GGATCATGAACTTCACAGCTTGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTATTC CATTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACAGAGGGTTATGGTGG TGATGTTGATCAATTAG
Intron 1-2 46,238,092 46,236,838 1,255
{"provisional":{"flourishes":{},"legend":{"_messages":[],"exons/Introns":{"flanking":{"class":"ef","default":null,"label":"#008000","text":"Flanking sequence"},"intron":{"default":null,"text":"Intron sequence","label":"#aaaaaa","class":"ei"},"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"}}},"seq":[{"style":[1]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}},"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only"}
gtatgtgaactctttgactattatt..........caagtacattttcttttcttgccag
2 rna5522-E2 46,236,837 46,236,759 1 2 79
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"seq":[{"style":[1]},{"style":[1,-18,0]}],"legend":{"_messages":[],"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"},"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"}}}}}
CTGCTTTGAAACTTTTGGGCGAGAAAACTACTCTTTTATCACCTGAGGTAGTTGTTGCAT CTGGGATTCCTTGTTGCAG
Intron 2-3 46,236,758 46,236,593 166
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"expect":[],"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"},"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"},"utr":{"class":"eu","label":"#cd6839","text":"UTR","default":null},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"}}},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{}}}
gttagttgcttgacatatttgttat..........tatccatgccggtgtttctttctag
3 rna5522-E3 46,236,592 46,236,525 2 1 68
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"legend":{"_messages":[],"exons/Introns":{"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"class":"ei","default":null,"label":"#aaaaaa","text":"Intron sequence"},"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"exon1":{"default":null,"text":"Translated sequence","label":"#1044ee","class":"e1"}}},"seq":[{"style":[1]},{"style":[1,-7,0]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{}}}
GTTAGTACAGAATCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATT CAGCCACG
Intron 3-4 46,236,524 46,235,676 849
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"},"intron":{"class":"ei","label":"#aaaaaa","text":"Intron sequence","default":null},"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"}}},"seq":[{"style":[1]}],"expect":[],"flourishes":{}}}
gtaattgctttgaagtttatgtaca..........atgtgtacaatatggtgaaatgaag
4 rna5522-E4 46,235,675 46,235,525 1 2 151
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"legend":{"_messages":[],"exons/Introns":{"flanking":{"default":null,"text":"Flanking sequence","label":"#008000","class":"ef"},"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"utr":{"class":"eu","label":"#cd6839","text":"UTR","default":null},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"}}},"expect":[],"seq":[{"style":[1]},-1,{"style":[1,-30,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{}}}
GTTTTAACTGTGGGGAAGCTGCTAACTTTGGGACTCCACAATGGCTTGGCATAGCTAAAG AAGCTGCAGTGCGTAGAGCTACAATGAATCATCTTCCTATGCTCTCCCATCAGCAACTGC TTTACTTGCTGACCATGTCTTTTATTTCAAG
Intron 4-5 46,235,524 46,235,097 428
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}],"expect":[],"legend":{"_messages":[],"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null},"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"exon1":{"class":"e1","text":"Translated sequence","label":"#1044ee","default":null}}}},"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only"}
gtgagaaaattttctaacacaacct..........tttcttctggttttgattttgatag
5 rna5522-E5 46,235,096 46,234,558 2 1 539
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"_messages":[],"exons/Introns":{"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null},"utr":{"default":null,"text":"UTR","label":"#cd6839","class":"eu"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"}}},"expect":[],"seq":[{"style":[1]},-7,{"style":[1,-58,0]}],"flourishes":{}}}
CGTGCCCAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGA AGAAAGAGAGATTCTAGTAAAACAGGCTTTTATAGAAGATATGCTGCACGAAAACAAGCT GCTATCCATTCTTCTTGGAAAAGAAGCTACTAAAGAAGTTGTTTTATGGAATGTTGATTT ACTACCAGATTCTGGCAAATATCGCCAGTTGCCTGATTTAGCTTCTACTTCTGGAACCTA TATGGCGGACATGTCAAATGATAATATTAGTTCTGCTGATAAGAGTAGCCATTGTCTGCT TGATGAGATGAGTTTGTACATGGAGAATCTGACCGATTCAGATGTTGGCTATGATGATCT TCCATGTCACTTCCAAACTGATTCAGGAGCATTGGTTTGTGTGGGTTGTGGAATACTTGG TTTTCCGTTTATGACATTAATACAACCAACTGAAAAATTGATAATGGAACTTCCTGATAA TCATCTAGTTGAAGATTCCTCTCTGAACTCTGTTGGCTCCTTTCATAGTGCAGTCTCAA
Intron 5-6 46,234,557 46,233,893 665
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"flanking":{"class":"ef","label":"#008000","text":"Flanking sequence","default":null},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"}}}}}
gtaatactttgtcctataatctatt..........atgagttatgtaatctgttttccag
6 rna5522-E6 46,233,892 46,233,701 1 1 192
{"provisional":{"flourishes":{},"legend":{"_messages":[],"exons/Introns":{"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"default":null,"text":"Intron sequence","label":"#aaaaaa","class":"ei"},"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"}}},"seq":[{"style":[1]},-2,{"style":[1,-11,0]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]}},"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only"}
GGGATCTTTCTGTTTCTGAACTTGCCTGTGCAAAGTATTCGCCGGATCAGTCATTGAACG AGTGCAATAAATGTTGGAACACCTCCAGTACATTTTTGAAGCCGCGGATTTTCTGCTTGG AGCATGCTGTTCAGGTTGTGGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAA TTTGCCATTCAG
Intron 6-7 46,233,700 46,233,177 524
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null},"utr":{"text":"UTR","label":"#cd6839","default":null,"class":"eu"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"}}}}}
gtctgtttgaagattagaaacctgt..........ctttacgattctgctttttttgtag
7 rna5522-E7 46,233,176 46,230,412 1 - 2,765
{"provisional":{"flourishes":{},"legend":{"_messages":[],"exons/Introns":{"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"class":"ei","default":null,"label":"#aaaaaa","text":"Intron sequence"},"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"class":"e1","text":"Translated sequence","label":"#1044ee","default":null}}},"expect":[],"seq":[{"style":[1]},-36,{"style":[1,-43,2]},{"style":[2]},-7,{"style":[2,-4,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]}},"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only"}
ACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATACAGGGTGATTTTG ATTATAACGAGGTTCCAATGGATATTGCATCCCCAGAAAATTTGGCTCTGATAGATCTGG CAATTGATGGTAAAGAACTTGATGAATGTGAAGATTGGACATCTAAACTAGGTCTTAATC TGCGATTTTGTGTCAATAATATAAACAAATCTCCATGTAAACAAGTTCCTTTTACACTAG CATTAGGGATGCAGTTCTATGATAAACGTCCTGGTTTATCTTTAAATTGGCATTCACAGA AAGCTCGATCTAAAAGGTCAAATCGTTTAGCTCAGTCTAAACCTGACGACATTCAGAGAA AGAAGGATGATCAATTGCAGGAAAGAATTGATGGCTCCACTGCTGAAAAGAAACTACTTC AGTATTCAAGGAGAAAATTCAAGCCAAAGCAAAGTTGTTTCTCTGTAGCAATCACGGTCT GTGAATGTGAATCCCATGAAAAATCCAAAAATGTGTCCGCTGTTTTGAGTGCGGAGCATT ATAAATGTGTTTCTAAAGATGAGCTTGACACAGATAATTTCAGGAGCGATTGTGCATTGT CTCGTGGCTCTGCTTCTGCTGCAATGTCTCCATTGCATAATGAAATCCAGAATGCTGAAG CTCCCACTAGTATGAGCTTGAATACTAGTGTCTCGGAAAAATGCAGCAAAGAGAACCAGA ATTGTCAGAACAATAAATATTCTGGCTCACTTTCAAATGGAATTGACAAAAATGTTGATG TGTTTGGAAACAACCAAATTACAGAAGCAATTGCCATTGGTAGCAAGTGTGATAGCTTAG ATTTAGTTGGTGAAGGGTATCAAGAACAGCAGTCTGCATGCAAAAGCAACAGTGAAGCTG TTTTATCTACTGCTTCATTGGTAAACCAAACTGCTCTCGCTACTGTGGATGGAAGTTTTG AAAGTCCAATTAATAACCAGGCCGAAGAAAGGGTTAGCAATTCTATGTCATTGAAAGAGA CAATTGAGCGAGAAAGTAAGTCTTTGAATGAAATGGACAAGGAACCTCTAAATGATGATA AAGAAATAAGTGAACATGCTCCTACTGCAGACATTTGTGAAGTTCCAAGAGAGCTTTATG CTTCTGCAAACTTCCATAATACAGTAGACTTGGATGCAATGCAGCAAGAACGACAAGTTG GAGAAAGTGGCGAACAGGAGATAATTCAGTCCACTCATATTTCCGCAAAACAATTGTATG AATCTACAAGTGGGGAATATGCAGAGGGATTGCACAATGAAGTGATTTTGGAGTCTTCAA AGCAGTGTCAGATCCAAAATGAGAATATAACTATTGAGGAACATGTATCTAATTATGTTG CAAAAGGTGACAATAGAAGTATAACCATATCAGAAATAAGTTGTTCTGATGTTTCAGCAG AAACCTGTCCCGAAAAAGACTCATGTATTCAATTTGTTTCGAATACTGAAAAGGAAATGG AAATCCAACCCATTCATAGAGTTGATGAGGAACTCTCTATATCAATCCAGGAATGTTCTC AAACCGAGAAAAAGACGTGTGGCAGAGAAAATGTAAATGGAAGTGAAGTTGATTTGTCAC AAGATGATGGGGAGCTGGAAAGCTGTGAGTTGACTACAGAAGTTCCCAGATCAAATGCTG GGAAGAAAAAAAGGAGGAAAATGGAAGACACGGAAAATAACCAATTTGATTGCTATGACT TTATAAGAAGTCCGTGTGAAAGGCTGAGGCCAAGAACTGGGAAGACTGCCACAGGCAAAA GTGTAGGAGACAACAGCCAAAATGACGAGGAAAATCGAGTAGCTAAAAGGACACGGAAAC CTGCCGAAGCTTCAATTCCTCGCAAGGATAAAAAATCCAATGTTAAAAGGCCGCATAAGT GCGACCTTGATAATTGCCGTATGAGTTTCACCACCAAGGCAGAGTTACAGTTGCACAAAC GTAACCTTTGCCCACATGAAGGGTGCGGTAAGAAATTCAGTTCCCACAAATACGCATTGA TTCACCAGCGCGTTCATGAGGATGATAGGCCTTTTAAATGCACATGGAAAGGTTGTTCCA TGTCATTCAAGTGGTCATGGGCAAGGACAGAGCATCTAAGGGTGCATACTGGGGAGAAGC CTTATCAATGTAAGGTTGAGGGTTGCGGTCTTTCTTTCAGGTTCATATCAGATTTTAGCA GGCACAGGCGGAAAACAGGACACTGTGTGAAATCTCCTGCTTGAAAATATTCATTCATTT TGGATTTTTTTGCCTATAACATGTGCATATGTCATATAGTAAGGCAATAGCTTTCTGACC ATAAACATTCTGGTTAGGTAGCTGTAAAGTTAGGACAGAATGGTTGTAGATGCTCAATAC CCAATTCATTTGGAAGTGGTTAGAATTTTGGCATTATTAGAGGGTGCTGCAGCATGTTGG TTGGTCATATCTCTACTGGTTTATTTTTTTTTTCTGCTGATTGCATGTACTTAAAGGTAG TTCTTTTAAGTTTTAAGTCTTCATTGGTAGCTGTTCATTGTTGGTGCATAACAATATTAA CTTCATTTGTTGATTATAAAGGGGGACAAGAAAGATGAGAGTAAGAAACAAGGCATGTGT TCTGATTGTACTTTCTATGAATTCCTCTTACATAGTCCTGTTTATTGCGTACTGGTGTAA CTCTATTCTTAAGTTTATTTGTATTTTAATTTTTTTTTTAAGAAGCCAAAATGGAATTTA AAGTA
3' downstream sequence
{"url":"/Medicago_truncatula/Component/Transcript/Exons/exons?g=gene5522;r=CM010648.10X0P+046230412-46239609;t=rna5522;db=core;time=1755195006274.274;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]},"legend":{"_messages":[],"exons/Introns":{"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"},"intron":{"class":"ei","default":null,"label":"#aaaaaa","text":"Intron sequence"},"utr":{"text":"UTR","label":"#cd6839","default":null,"class":"eu"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"}}},"seq":[{"style":[1]}],"expect":[]}}
tttatactttgatttttttttttatattttaaattggtggtttactttat..........
Medicago truncatula (MtrunA17r5.0_ANR) ▼ 
Summary
Sequence![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
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