Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: rna19319

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Description

putative transcription factor C2H2 family

Location

Primary_assembly CM010650.1: 53,357,819-53,360,231 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene gene19319 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	rna19319	1180	392aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A072V289	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........aacaaagttaattaagaaattccaatgattcctctgaaggatcgttgttg
1	rna19319-E1	53,357,819	53,358,345	0	2	527	ATGGCAAACAATACACACCATGTCATCATTGATATAGCAACAACTTCTGAAACAACCACC CTTCCTCGTCATCAATTACATGATGTTGATGATGATGGTAGATTGCATGTTTCACTTCAA ACTTCAAATCATTCATCGTCGCCACGACGAGGAGGAGGAGGAGGAGGGCGGAATAGTAGA AGCCCATTGAATTCAGGGTTTTGGATTTCTTTTGAATTTATTTTCACATTATCTCAAATT ATTGCTTCTGTTATTGTTCTTATTTCATCAAGAGATGAGCATCCACGTGCTCCATTATTC GCTTGGATAGTTGGTTATGCTTCCGGTTGTGTTGTTTCCATTCCTTTGCTCCTTTGGCGA TATTTTGTTAGAGACCAAAATTCATCTCAAACCAATTCCAGGACTGATGATCCTTCTGGG ACACTTCTTTCTAATTCAACCGCAATTCATGGCGAAGATGATGTTCCTGTTGTTGCTGTC GCTTCCTCCAGAAATAGCCGAGCTTCGTCACGGTCGATGAGTGGAAG
	Intron 1-2	53,358,346	53,358,979			634	gtatagcattatcgttgttgttctt..........ctctctcctaccttcgtttaagcag
2	rna19319-E2	53,358,980	53,359,105	2	2	126	ACCAAAGCTACTCATGGAATACTTCAAAACCACCTTAGATTTATTTTTTGCAATATGGTT TGTTATTGGAAATGTGTGGATTTTTGGAGGACATGCATCCGCCAACGATGCTCCTAATTT GTATCG
	Intron 2-3	53,359,106	53,359,191			86	gtatgtatagcctttcaggaagtct..........catctgcttcctttttgttttacag
3	rna19319-E3	53,359,192	53,359,483	2	0	292	GTTATGTATAGTGTTTCTTACTTTCAGTTGTATCGGTTACGCAATGCCCTTCATTCTATG CTTAACAATATGTTGTTGCCTTCCTTGTATAATATCAACCCTTGGGGTCACAGAGGATTT GACACAAACCCGAGGCGCAACCTCTGAATCTATTAATGCTTTACCAACTCACATATTCAA AACGATGAAAAGTAAAAGCAATGATGAATCTGATAACATTCCAGTTGTTATTGAAGGTGG AATCGTGGCTGAAGGAACTGAAAAGGAACGCATGATCTCTGGAGAAGATGCT
	Intron 3-4	53,359,484	53,359,996			513	gtaagtacaaactatatttatttat..........ttgtaatttgcgtgcttgtgttcag
4	rna19319-E4	53,359,997	53,360,231	0	-	235	GTTTGCTGCATATGCATAGCAAACTATGAAAACGATGATGAGTTAAGAGAATTACCATGT TCACATCTTTTTCACAAAGAGTGCGTAGACAAGTGGTTGAAGATAAATGCATTATGCCCC CTTTGCAAGAGTGAAATTGGCGAGAATGTAACAGAACCAGTTATTGAGGAAAATGCCAAC CAACAAAGGGGTGAAAGCAGGGATGAGAATGGTATTGCCAGTACCTCGTCATAAT
	3' downstream sequence						atacatgcatattatacacttttgcatttttatggtgactcttttccttc..........

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