Transcript: rna16717

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	rna16717	1351	288aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7FK44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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..........tactgaaagcagcaacagttattctggatcagcccacatgtgaaaaaccc
TAGCGAAACAATCACACTCATTCTCTTCTATTGCTTCTTCTTCTTCTTCTTCTTCTTCAC
ACGCCTTGTGAGCAGCGAAGGTGTTGAATCCAACCTCCTCTGCGAACATGGCGTCAACCA
ATCGCACAGTGTTGCAATTCTCTTCATCTTCTTCCTCTTCGCAGAGCTTATCCGCTAAGG
TTCACCCTCTCGTCGTATTCAACATCTGCGACTGTTACGTTCGTCGCCCTGATCAAGCTG
AACGCGTCATTGGAACGCTTCTTGGATCTGTGCTTCCCGATGGAACTGTTGATATCCGTA
ATTCATATGCTGTTCCTCACAATGAATCCGTTGATCAG                      
gtccttcactcgcctccatctacat..........gttctgatttttcacttttttccag
GTTGCGTTGGACATAGAGTACCACCATAATATGTTGTTATCCCACCAAAAAGTGAATCAA
AAGGAAATCATAGTTGGATG                                        
gtaagtccagttcttttaaaatttc..........tgtaaactttggttattttatgcag
GTATTCAACTGGACTTGGAGTAACTGGTGGAAGTGCATTGATCCATGAGTTTTATTCTCG
AGAAGTGCCCAATCCCATTCATTTGACTGTTGATACAGGATTCACAGCTGGAGGGGGTAC
CATCAAAGCTTATGTGTCAAACAATTTATCTCTTGGAGACAGGCAGATTGCTGCACAGTT
TCAAGAAATTCCACTGGATCTTCGTATGGTTGAAGCTGAGCGAATTGGAT          
gtaagtattgattggattctcttta..........ttattgttttttcttgtaatgtcag
TTGATATCCTAAAGGCAACCACTGTTGACAAAATCCCCTCTGACTTAGAAGGCATGGAAG
CATCAATGGAGCATCTGCTAGCTCTGATTAATGACATCTACAAATATGTTGATGATGTTG
TG                                                          
gtatgatgcgctgcattcttttatt..........tgtattgattaatttttaatcgcag
GAAGGGCGTGTTGCACCAGACAACAAAATTGGGAAATTTATATCAGATGCAGTAGGTTCC
CTTCCCAAATTGCCCCCATCTGATTTTGATAAGCTTGTGAATGACAGCTTACAG      
gtgagattatgttctgtgtagctgt..........ctgacgcatgcttcatctgtttcag
GATCACTTGCTCATGGTATACTTATCTAGCATCACAAGAACTCAACTTAGCTTGGCTGAA
AAATTGAACACGGCTGCTCAGATTTTGTAATTCTGACTGTCTTTGAGCGAAGGCAAATTT
TCAAAGAGGTTTCCTTGTCATATTTTCCAGAAACTTGTAGTATCAGCATTTTATTCTCAA
GTCAACCTTTGCTTATTTTGTTGTATTTTGCGCATGGCAACACATACGTGGTTTTCTTCT
ATAAGGTTGTAGTGTAGCATTCACTTGTGTAATTTGTTATATTTGAAAAAAAATGAGCGA
AATCCTTTTTTCTACTTTTAGATATTTTAATTGTGTTTGAAAACGTTAGCATTTTCCAAA
AATATAATATAATGATCACAGTTTTTTTATATAAATCAGTTTAAGTTAGTATTTTTGTTC
CTCTGAATAGACATACAAACACTTTTAGCAAGGCTGATGAATTACTG             
ctattttaagttgaaatttgtgtttgattaattgaatttactgcttcttt..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........tactgaaagcagcaacagttattctggatcagcccacatgtgaaaaaccc
1	rna16717-E1	34,948,409	34,948,072	-	0	338	TAGCGAAACAATCACACTCATTCTCTTCTATTGCTTCTTCTTCTTCTTCTTCTTCTTCAC ACGCCTTGTGAGCAGCGAAGGTGTTGAATCCAACCTCCTCTGCGAACATGGCGTCAACCA ATCGCACAGTGTTGCAATTCTCTTCATCTTCTTCCTCTTCGCAGAGCTTATCCGCTAAGG TTCACCCTCTCGTCGTATTCAACATCTGCGACTGTTACGTTCGTCGCCCTGATCAAGCTG AACGCGTCATTGGAACGCTTCTTGGATCTGTGCTTCCCGATGGAACTGTTGATATCCGTA ATTCATATGCTGTTCCTCACAATGAATCCGTTGATCAG
	Intron 1-2	34,948,071	34,945,208			2,864	gtccttcactcgcctccatctacat..........gttctgatttttcacttttttccag
2	rna16717-E2	34,945,207	34,945,128	0	2	80	GTTGCGTTGGACATAGAGTACCACCATAATATGTTGTTATCCCACCAAAAAGTGAATCAA AAGGAAATCATAGTTGGATG
	Intron 2-3	34,945,127	34,944,632			496	gtaagtccagttcttttaaaatttc..........tgtaaactttggttattttatgcag
3	rna16717-E3	34,944,631	34,944,402	2	1	230	GTATTCAACTGGACTTGGAGTAACTGGTGGAAGTGCATTGATCCATGAGTTTTATTCTCG AGAAGTGCCCAATCCCATTCATTTGACTGTTGATACAGGATTCACAGCTGGAGGGGGTAC CATCAAAGCTTATGTGTCAAACAATTTATCTCTTGGAGACAGGCAGATTGCTGCACAGTT TCAAGAAATTCCACTGGATCTTCGTATGGTTGAAGCTGAGCGAATTGGAT
	Intron 3-4	34,944,401	34,943,736			666	gtaagtattgattggattctcttta..........ttattgttttttcttgtaatgtcag
4	rna16717-E4	34,943,735	34,943,614	1	0	122	TTGATATCCTAAAGGCAACCACTGTTGACAAAATCCCCTCTGACTTAGAAGGCATGGAAG CATCAATGGAGCATCTGCTAGCTCTGATTAATGACATCTACAAATATGTTGATGATGTTG TG
	Intron 4-5	34,943,613	34,943,543			71	gtatgatgcgctgcattcttttatt..........tgtattgattaatttttaatcgcag
5	rna16717-E5	34,943,542	34,943,429	0	0	114	GAAGGGCGTGTTGCACCAGACAACAAAATTGGGAAATTTATATCAGATGCAGTAGGTTCC CTTCCCAAATTGCCCCCATCTGATTTTGATAAGCTTGTGAATGACAGCTTACAG
	Intron 5-6	34,943,428	34,943,256			173	gtgagattatgttctgtgtagctgt..........ctgacgcatgcttcatctgtttcag
6	rna16717-E6	34,943,255	34,942,789	0	-	467	GATCACTTGCTCATGGTATACTTATCTAGCATCACAAGAACTCAACTTAGCTTGGCTGAA AAATTGAACACGGCTGCTCAGATTTTGTAATTCTGACTGTCTTTGAGCGAAGGCAAATTT TCAAAGAGGTTTCCTTGTCATATTTTCCAGAAACTTGTAGTATCAGCATTTTATTCTCAA GTCAACCTTTGCTTATTTTGTTGTATTTTGCGCATGGCAACACATACGTGGTTTTCTTCT ATAAGGTTGTAGTGTAGCATTCACTTGTGTAATTTGTTATATTTGAAAAAAAATGAGCGA AATCCTTTTTTCTACTTTTAGATATTTTAATTGTGTTTGAAAACGTTAGCATTTTCCAAA AATATAATATAATGATCACAGTTTTTTTATATAAATCAGTTTAAGTTAGTATTTTTGTTC CTCTGAATAGACATACAAACACTTTTAGCAAGGCTGATGAATTACTG
	3' downstream sequence						ctattttaagttgaaatttgtgtttgattaattgaatttactgcttcttt..........

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Transcript: rna16717

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