Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: rna12436

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Description

putative transcription regulator A20-like family

Location

Primary_assembly CM010649.1: 48,060,448-48,063,363 forward strand.

About this transcript

This transcript has 3 exons and is annotated with 13 domains and features.

Gene

This transcript is a product of gene gene12436 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	rna12436	1626	172aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7FGP6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........cctttaaagaaggacaatatcggaaatgaaacatgaaacctcaaccccaa
1	rna12436-E1	48,060,448	48,060,626	-	-	179	TAACCATTTCCCACGTCGCACCCCAATCAGTGAAGATCGTTCGTTGGCAAAACAAAGAGA AAGAGAAACAAAGCTTTTCAAACACAAAAAAAAAAGGAGAGAGAAACAAACACTGACAGA ACTCATTTTCATTTCTTTCTCTCTCCTCTTTCTCCCTCTTCGATCCCAAATCTTCAAAG
	Intron 1-2	48,060,627	48,060,757			131	gttagggttccatttcctaattatc..........tttgttttgaatttggtgaatacag
2	rna12436-E2	48,060,758	48,060,821	-	-	64	GATTATTATTTATACGATTCTGATCTTGTAGATCGGCTTGAAGCTTTCGTTTCCTGGCTA CAAG
	Intron 2-3	48,060,822	48,061,980			1,159	gttggatatattcacgtggtggata..........tggtatttaaatttctttggtgcag
3	rna12436-E3	48,061,981	48,063,363	-	-	1,383	GAAAGTTGAAAAAAGATGGACCATGATCAGACTGGATGTGAAGCAGCCCCAGAAGGTCCT ATGTTGTGCATCAACAACTGTGGATTTTTCGGAAGCGCAGCTACCATGAACATGTGTTCC AAGTGCCACAAAGACATGATGCTGAAACAGGAGCAGGCCACACTTGCAGCATCTTCCATT GGGAACATCATGAATGGGTCATCAAGCAGCAGTGGAATTGAACCTGCTATCACTGCCAAC GTGGAGATCTCAGTCGATCCAGTGGAGCCCAAAATCATCTCTGCAGAACCGTTAGTTGCT TCCGGCTCAGAGGAGAGTTTGGAGAAGAAGCCAAAGGATGGTCCTAAGCGGTGCAGCAAC TGCAATAAGCGGGTTGGTTTGACAGGATTTAATTGTCGATGTGGTAATCTTTACTGTGCT GTACATCGCTACTCAGACAAGCATGACTGCCCATTTGATTACCGCACTGCTGGACGTGAT GCAATAGCAAAAGCAAACCCTGTTGTGAAGGCTGAAAAGCTTGACAAGATCTAGATTTGG TGTCTTAAAGTTTCATGTCTTGAGATGCTGTTATGCTCAATGTCATCATGAGATGATCCG AGTTTCCTGCATATTTTAATGGTGTTTTTATTATATTTTTATATGTGATGGGGGACTTGG GTATTATCTCTGCAGTTTGAGAGAGACTGCATTTCATTTGATTGGCCAAAATATATGCCC CAGTGTTTTGAAGTCTTTAAATCTCTGCTAGTTTAGTGGAAGTTGGTGTTGTCTGCATTA TAAGGCGTATATTCTGTTCCCTATCTATCTCTGTAATAGTACATGTCAAAATGGTATGTG CAATTGACAGTTAATTTCAGATTGATCCATAGACATGAGTAGATTGTACTATATTATTGT GGTTTTTATGGCTATCATTTAATTTCTCTAGGTAAAGAATGTGTTGGATGTGCTTGGGCT CACTATTTATCATATATTAAAATTTAATACTGGGGTCTATCTTCAAGATAACTAAAGAAA ACTGGCAATTATATCTCAAACATTATGGTAACTGCTTATACTTGTATTGAGTAATGAAGT TATTATTTTGTTGCTGATTTCGAAAGTAAAATTGCGGAAGTGAAACACAGGTAAGAAAAA TGGTGCAGGTAAAAATAGTTATATGCCCCCTTCATATGAATATGCAAAAGTATTTAAAGT GCTTATTATTGTTAAAAGCATTCAGGTCTAGGTGGTCGTTTGTAAGGTGTGTGAGTTTTG TGGATCTTAAAATACTGAATTCGATTATTCTTGATAGAAAAAAGGTAAGCAAATAAGCTG TTGGAAAATAGAGTTTTTCAATTGTTTATTTTAAAAGTTTATCAAAATGATTTAGCTTTT CAA
	3' downstream sequence						aatatctttcaaatagtttatataaaatatgaattttctatcaagttttt..........

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