Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: rna4005

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Description

putative transcription factor interactor and regulator AUX-IAA family

Location

Primary_assembly CM010648.1: 35,286,909-35,288,599 forward strand.

About this transcript

This transcript has 3 exons and is annotated with 9 domains and features.

Gene

This transcript is a product of gene gene4005 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	rna4005	1308	204aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7FMP7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	102	204	-	3.10.20.90	-
Superfamily	105	194	-	SSF54277	-
Pfam	16	202	AUX/IAA domain	PF02309	IPR033389 [Display all genes with this domain]
PANTHER	13	199	AUX/IAA protein	PTHR31734	IPR003311 [Display all genes with this domain]
PROSITE profiles	108	195	PB1-like domain	PS51745	IPR053793 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	38	87
MobiDBLite	56	79
Seg	55	68
Alphafold	1	204

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