Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: rna28873

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Description

putative aminoacyltransferase, E1 ubiquitin-activating enzyme

Location

Primary_assembly CM010652.1: 5,242,037-5,244,765 reverse strand.

About this transcript

This transcript has 2 exons and is annotated with 12 domains and features.

Gene

This transcript is a product of gene gene28873 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	rna28873	2346	451aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G7K2F8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	62	137	-	SSF57850	-
Gene3D	140	445	Armadillo-like helical	1.25.10.10	IPR011989 [Display all genes with this domain]
Superfamily	155	436	Armadillo-type fold	SSF48371	IPR016024 [Display all genes with this domain]
PANTHER	60	437	E3 ubiquitin-protein ligase PUB22/23/24-like	PTHR22849	IPR045185 [Display all genes with this domain]
CDD	68	118	PUB protein, U-box domain, plant	cd16664	IPR045210 [Display all genes with this domain]
PROSITE profiles	66	140	U-box domain	PS51698	IPR003613 [Display all genes with this domain]
Pfam	67	137	U-box domain	PF04564	IPR003613 [Display all genes with this domain]
SMART	70	133	U-box domain	SM00504	IPR003613 [Display all genes with this domain]
Gene3D	66	139	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type	Start	End
Seg	33	50
Seg	191	202
Alphafold	1	451

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