Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: rna25004

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Description

putative aminoacyltransferase, E1 ubiquitin-activating enzyme

Location

Primary_assembly CM010651.1: 43,380,779-43,387,393 forward strand.

About this transcript

This transcript has 9 exons and is annotated with 18 domains and features.

Gene

This transcript is a product of gene gene25004 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	rna25004	4372	914aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A072UYY3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	71	903	-	PTHR46116	-
Pfam	110	240	-	PF23046	-
Pfam	330	402	-	PF23043	-
SMART	672	829	-	SM00212	-
PROSITE profiles	669	829	Ubiquitin-conjugating enzyme E2	PS50127	IPR000608 [Display all genes with this domain]
CDD	671	824	Ubiquitin-conjugating enzyme E2	cd00195	IPR000608 [Display all genes with this domain]
Pfam	674	819	Ubiquitin-conjugating enzyme E2	PF00179	IPR000608 [Display all genes with this domain]
Gene3D	629	907	Ubiquitin-conjugating enzyme/RWD-like	3.10.110.10	IPR016135 [Display all genes with this domain]
Superfamily	662	838	Ubiquitin-conjugating enzyme/RWD-like	SSF54495	IPR016135 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	24
MobiDBLite	8	24
MobiDBLite	496	528
MobiDBLite	515	528
Seg	5	24
Seg	170	181
Seg	665	676
Seg	778	789
Alphafold	1	914

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