Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: rna23577

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Description

putative chromatin remodeler Bromodomain family

Location

Primary_assembly CM010651.1: 33,430,748-33,439,194 reverse strand.

About this transcript

This transcript has 11 exons and is annotated with 37 domains and features.

Gene

This transcript is a product of gene gene23577 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	rna23577	4164	1206aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A072ULR2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	556	641	-	1.10.8.60	-
CDD	900	1009	-	cd05528	-
Pfam	582	619	AAA ATPase, AAA+ lid domain	PF17862	IPR041569 [Display all genes with this domain]
SMART	416	557	AAA+ ATPase domain	SM00382	IPR003593 [Display all genes with this domain]
PANTHER	1081	1185	ATPase family AAA domain-containing protein ATAD2-like	PTHR23069	IPR045199 [Display all genes with this domain]
PROSITE patterns	525	543	ATPase, AAA-type, conserved site	PS00674	IPR003960 [Display all genes with this domain]
Pfam	420	555	ATPase, AAA-type, core	PF00004	IPR003959 [Display all genes with this domain]
SMART	900	1007	Bromodomain	SM00297	IPR001487 [Display all genes with this domain]
Pfam	911	981	Bromodomain	PF00439	IPR001487 [Display all genes with this domain]
PROSITE profiles	923	985	Bromodomain	PS50014	IPR001487 [Display all genes with this domain]
Prints	932	948	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Prints	948	966	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Prints	966	985	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Gene3D	892	1020	Bromodomain-like superfamily	1.20.920.10	IPR036427 [Display all genes with this domain]
Superfamily	896	1011	Bromodomain-like superfamily	SSF47370	IPR036427 [Display all genes with this domain]
Superfamily	378	645	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Gene3D	378	648	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Gene3D	692	821	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Superfamily	704	919	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	23
MobiDBLite	1	87
MobiDBLite	42	51
MobiDBLite	72	82
MobiDBLite	100	239
MobiDBLite	125	150
MobiDBLite	180	229
MobiDBLite	230	239
MobiDBLite	276	300
MobiDBLite	278	288
MobiDBLite	1085	1106
MobiDBLite	1088	1098
Seg	201	232
Seg	292	304
Seg	312	321
Seg	738	749
Seg	1042	1053
Alphafold	1	1206

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