Transcript: Manes.06G000800.1.v8.1
.
Show/hide columns (1 hidden)
- Manes.06G000800.1.v8.1 2244 499aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
A0A2C9VLJ3 A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical,
.
{"url":"/Manihot_esculenta/Component/Transcript/Sequence_cDNA/sequence?g=Manes.06G000800.v8.1;r=CM004392.2%3A324683-330643;t=Manes.06G000800.1.v8.1;db=core;time=1743740277387.387;adorn=only","provisional":{"expect":["variants","variants"],"ref":{"style":[[0,""],[0,"background-color:#ffdf33;color:#1044ee"],[32,"333333"],[-12,"f9af;color:#1044ee"],[12,"333333"],[-11,"fff;color:#1044ee"],[11,"333333"],[-32,"color:#1044ee;background-color:#ffdf33"],[34,"f9af"],[1,"fff"],[-28,"333333"],[5,"3;background-color:#ffdf33"],[22,"f9af"],[1,"fff"]]},"flourishes":{},"seq":[{"style":[10]},-36,{"style":[10,-23,0]},{"style":[11,2]},{"style":[2]},{"style":[2,-31,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4]},{"style":[4,-1,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4]},{"style":[4,3,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3]},{"style":[8,-1,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[3,-1,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3]},{"style":[8,-1,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12]},{"style":[12,-1,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12]},{"style":[12,-1,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12]},{"style":[4,-1,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,3,8,-1,5,-2,8,-2,5,-2,8]},{"style":[3,-1,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3]},-1,{"style":[8,-1,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8]},-1,{"style":[3,-1,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3]},{"style":[8,-1,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[3,-1,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3]},{"style":[8,-1,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,12,-1,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12]},{"style":[12,-1,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3]},{"style":[3,-1,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3]},{"style":[8,-1,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8]},{"style":[3,-1,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3]},{"style":[8,-1,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[8,-1,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8]},-1,{"style":[8,-1,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[3,-1,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,7]},{"style":[7]},-4,{"style":[1]},-1,{"style":[7]},-1,{"style":[1,-23,10,0]},{"style":[10]},-36,{"style":[10,-23,0]},{"style":[10]},-36,{"style":[10,-23,0]}],"legend":{"codons":{"c1":{"config":"c1","label":null,"text":"Alternating codons","default":"#fff9af","class":"c1"},"c0":{"default":"#ffffff","class":"c0","label":null,"config":"c0","text":"Alternating codons"}},"_messages":[],"exons":{"exon0":{"label":"#333333","config":"exon0","text":"An exon","default":null,"class":"e0"},"exon1":{"label":"#1044ee","config":"exon1","text":"Another exon","default":null,"class":"e1"}},"other":{"utr":{"label":null,"config":"utr","text":"UTR","default":"#ffdf33","class":"cu"}}}}}
1 C AGCATCCACCTATGTGCTCTGTACAGCACACTGCCACTACTCTCTGCCACCGCGCTATC 60
............................................................
............................................................
61 ATTGCCGGTTGCTTCTTCTTTATATATATTGCCTTCTTGGCTGTACTTGTGCACAATTCA 120
............................................................
............................................................
121 TCTCTCCCTCTCTTAAGAATAACTTAACAAGG ATG GTC ATC ACT ACC ACC ATT GCT GCA G 180
................................ATGGTCATCACTACCACCATTGCTGCAG 28
................................-M--V--I--T--T--T--I--A--A-- 9
181 AC TCC GAT GAG TTT CTG TAC TGC ACT TTT GCT TCC AGA TAT GTT CGC AGT CCT GTT CCA A 240
29 ACTCCGATGAGTTTCTGTACTGCACTTTTGCTTCCAGATATGTTCGCAGTCCTGTTCCAA 88
10 D--S--D--E--F--L--Y--C--T--F--A--S--R--Y--V--R--S--P--V--P-- 29
241 G G TTT AAG ATG CCA GAG AAG TCG ATG CCA AAG GAA GCG GCG TAT CAG GTG ATT AAT GAT G 300
89 GGTTTAAGATGCCAGAGAAGTCGATGCCAAAGGAAGCGGCGTATCAGGTGATTAATGATG 148
30 R--F--K--M--P--E--K--S--M--P--K--E--A--A--Y--Q--V--I--N--D-- 49
301 AA CTG ATG TTG GAT GGG AAT CCA AGG CTT AAC TTG GCT TCT TTT GTC ACC ACT TGG ATG G 360
149 AACTGATGTTGGATGGGAATCCAAGGCTTAACTTGGCTTCTTTTGTCACCACTTGGATGG 208
50 E--L--M--L--D--G--N--P--R--L--N--L--A--S--F--V--T--T--W--M-- 69
361 AG CCT GAG TGT AAT GAT CTC ATC TTG GCT TCT ATT AAC AAG AAC TAT GTT GAT ATG GAT G 420
209 AGCCTGAGTGTAATGATCTCATCTTGGCTTCTATTAACAAGAACTATGTTGATATGGATG 268
70 E--P--E--C--N--D--L--I--L--A--S--I--N--K--N--Y--V--D--M--D-- 89
421 AG TAC CCT GTT ACA ACT GAG CTC CAG AAT CGG TGT GTG AAT ATG ATA GCC CAC CTG TTC C 480
269 AGTACCCTGTTACAACTGAGCTCCAGAATCGGTGTGTGAATATGATAGCCCACCTGTTCC 328
90 E--Y--P--V--T--T--E--L--Q--N--R--C--V--N--M--I--A--H--L--F-- 109
481 AT GCT CCT GTT GGA GAT GAT GAA ACT GCA GTT GGG GTG GGG ACT GTG GGA TCA TCA GAG G 540
329 ATGCTCCTGTTGGAGATGATGAAACTGCAGTTGGGGTGGGGACTGTGGGATCATCAGAGG 388
110 H--A--P--V--G--D--D--E--T--A--V--G--V--G--T--V--G--S--S--E-- 129
541 CA ATT ATG CTG GCT GGA TTA GCT TTT AAA AGG AAA TGG CAG AAC AAG AGA AAA GCA GAG G 600
389 CAATTATGCTGGCTGGATTAGCTTTTAAAAGGAAATGGCAGAACAAGAGAAAAGCAGAGG 448
130 A--I--M--L--A--G--L--A--F--K--R--K--W--Q--N--K--R--K--A--E-- 149
601 GC AAA CCA TAT GAT AAG CCC AAC ATT GTG ACG GGA GCT AAT GTG CAA G TC TGT TGG GAG A 660
449 GCAAACCATATGATAAGCCCAACATTGTGACGGGAGCTAATGTGCAAGTCTGTTGGGAGA 508
150 G--K--P--Y--D--K--P--N--I--V--T--G--A--N--V--Q--V--C--W--E-- 169
661 AA TTC GCA AGG TAC TTC GAA GTT GAA CTA AAG GAA GTG AAG CTG AAA GAG GGC TAT TAT G 720
509 AATTCGCAAGGTACTTCGAAGTTGAACTAAAGGAAGTGAAGCTGAAAGAGGGCTATTATG 568
170 K--F--A--R--Y--F--E--V--E--L--K--E--V--K--L--K--E--G--Y--Y-- 189
721 TG ATG GAC CCT GTG AAA GCA GTT GAA ATG GTG GAT GAG AAC ACA ATC TGT GTT GCA GCC A 780
569 TGATGGACCCTGTGAAAGCAGTTGAAATGGTGGATGAGAACACAATCTGTGTTGCAGCCA 628
190 V--M--D--P--V--K--A--V--E--M--V--D--E--N--T--I--C--V--A--A-- 209
781 TT TTA GGA TCA ACA TTG ACG GGA GAG TTT GAA GAT GTG AAG CTT CTT AAT GAA CTA CTC A 840
629 TTTTAGGATCAACATTGACGGGAGAGTTTGAAGATGTGAAGCTTCTTAATGAACTACTCA 688
210 I--L--G--S--T--L--T--G--E--F--E--D--V--K--L--L--N--E--L--L-- 229
841 CT AAA AAG AAT GAG GAA ACT GGA TGG GAC ATC CCA ATT CAC GTC GAT GCT GCC AGT GGA G 900
689 CTAAAAAGAATGAGGAAACTGGATGGGACATCCCAATTCACGTCGATGCTGCCAGTGGAG 748
230 T--K--K--N--E--E--T--G--W--D--I--P--I--H--V--D--A--A--S--G-- 249
901 GT TTT GTT GCT CCT TTT GTT TGC CCA GAT CTT CCG TGG GAT TTC CGT TTG CCA TTG GTG A 960
749 GTTTTGTTGCTCCTTTTGTTTGCCCAGATCTTCCGTGGGATTTCCGTTTGCCATTGGTGA 808
250 G--F--V--A--P--F--V--C--P--D--L--P--W--D--F--R--L--P--L--V-- 269
961 AG AGT ATT AAT GTA AGT GGT CAT AAG TAT GGC CTT GTT TAT CCT GGT GTT GGT TGG GTT G 1020
809 AGAGTATTAATGTAAGTGGTCATAAGTATGGCCTTGTTTATCCTGGTGTTGGTTGGGTTG 868
270 K--S--I--N--V--S--G--H--K--Y--G--L--V--Y--P--G--V--G--W--V-- 289
1021 TG TGG AGG GCT AAA GAA GAC TTG CCG GAG GAG CTT ATT TTT CAC ATT AAC TAC CTT GGA T 1080
869 TGTGGAGGGCTAAAGAAGACTTGCCGGAGGAGCTTATTTTTCACATTAACTACCTTGGAT 928
290 V--W--R--A--K--E--D--L--P--E--E--L--I--F--H--I--N--Y--L--G-- 309
1081 CT GAT CAA CCC ACT TTC ACT CTC AAC TTC TCA AAA G GC TCT AGT CAA ATA ATT GCT CAA T 1140
929 CTGATCAACCCACTTTCACTCTCAACTTCTCAAAAGGCTCTAGTCAAATAATTGCTCAAT 988
310 S--D--Q--P--T--F--T--L--N--F--S--K--G--S--S--Q--I--I--A--Q-- 329
1141 AT TAT CAG TTT ATA AGG CTT GGT TTT GAG GGT TAT AAG AAA GTT ATT GAA AAC TGT ATG G 1200
989 ATTATCAGTTTATAAGGCTTGGTTTTGAGGGTTATAAGAAAGTTATTGAAAACTGTATGG 1048
330 Y--Y--Q--F--I--R--L--G--F--E--G--Y--K--K--V--I--E--N--C--M-- 349
1201 AA AAT ACA AGG GTG CTG AAA GGA GGA CTT GAG AAA ACA GGG AGG TTT GAC ATT GTC TCC A 1260
1049 AAAATACAAGGGTGCTGAAAGGAGGACTTGAGAAAACAGGGAGGTTTGACATTGTCTCCA 1108
350 E--N--T--R--V--L--K--G--G--L--E--K--T--G--R--F--D--I--V--S-- 369
1261 AA GAT GTT GGA GTG CCT CTT GTG GCC TTC TCT CTC AAA GAC AGC AGT AAA TAC AGT GTG T 1320
1109 AAGATGTTGGAGTGCCTCTTGTGGCCTTCTCTCTCAAAGACAGCAGTAAATACAGTGTGT 1168
370 K--D--V--G--V--P--L--V--A--F--S--L--K--D--S--S--K--Y--S--V-- 389
1321 TT GAT ATG TCT GAG AAC TTG AGA AGA TTT GGC TGG ATA ATT CCG GCG TAC ACA ATT CCA G 1380
1169 TTGATATGTCTGAGAACTTGAGAAGATTTGGCTGGATAATTCCGGCGTACACAATTCCAG 1228
390 F--D--M--S--E--N--L--R--R--F--G--W--I--I--P--A--Y--T--I--P-- 409
1381 CA GAT GCC GAG CAA ATT GCT GTT CTT CGA GTG GTG GTC AGG GAA GAT TTC AGC CGG AGT C 1440
1229 CAGATGCCGAGCAAATTGCTGTTCTTCGAGTGGTGGTCAGGGAAGATTTCAGCCGGAGTC 1288
410 A--D--A--E--Q--I--A--V--L--R--V--V--V--R--E--D--F--S--R--S-- 429
1441 TG GCT GAA AGA CTC ATC TGG CAC ATT GAG CAA GTT TTG GAG GAA ATG GAC TCA CTT CCT A 1500
1289 TGGCTGAAAGACTCATCTGGCACATTGAGCAAGTTTTGGAGGAAATGGACTCACTTCCTA 1348
430 L--A--E--R--L--I--W--H--I--E--Q--V--L--E--E--M--D--S--L--P-- 449
1501 TC CAG ATG TCC ACC AAA GCT GCC ACT GTT AAG AAA CAA CTG GAG AGC ACT GAA GGG CAG A 1560
1349 TCCAGATGTCCACCAAAGCTGCCACTGTTAAGAAACAACTGGAGAGCACTGAAGGGCAGA 1408
450 I--Q--M--S--T--K--A--A--T--V--K--K--Q--L--E--S--T--E--G--Q-- 469
1561 AG GTA GTT AAA AAG AGT GAG AAG GAG ATG CAG GAA GAG ATC ACT CGG TAT TGG AGG CGG C 1620
1409 AGGTAGTTAAAAAGAGTGAGAAGGAGATGCAGGAAGAGATCACTCGGTATTGGAGGCGGC 1468
470 K--V--V--K--K--S--E--K--E--M--Q--E--E--I--T--R--Y--W--R--R-- 489
1621 TT GTA GAT GGC AAG AGA ATT GGA GTG TGC TAG GCGTCTGCTATTGACTTACTGTTCTCTT 1680
1469 TTGTAGATGGCAAGAGAATTGGAGTGTGCTAG............................ 1500
490 L--V--D--G--K--R--I--G--V--C--*-............................ 499
1681 TCTGTGAGCCTTCTTGTTGTTTGATAGTATCATAAATGTGAGAAAATAAAACATGTATTT 1740
............................................................
............................................................
1741 TGGGAATTAGAAAAGAAGACGATGATTTAAAAGCAATAATGTCTAGTTTCTTGCATCTCT 1800
............................................................
............................................................
1801 GGAACAGTAGGGTGTTCAATGGCTGCAAATGAATGATTTGAGAGTCGACTCGATTCAAAA 1860
............................................................
............................................................
1861 CTAACAGCAAAACCAGCAACACTATTGTGACAAGAAAGAAGCTAATCAACGATAAAGAAA 1920
............................................................
............................................................
1921 TTCATCGACTTTTAAATTGAAATAGTTGTGAACCATTTTCAGGAATAAAAACTTGTGTGT 1980
............................................................
............................................................
1981 TCTAGTGAGTAGGAGTTGAAAAAGCCTTGTGTACCATTGAAGACGAATTCTGGGAAGCGT 2040
............................................................
............................................................
2041 TAATTGCGCAGTATTCTCCTTCCAATGCATAAATAATTCAGAACAAACGGCAGCTGCAAT 2100
............................................................
............................................................
2101 ATTGTGATGTTGTCCCGGTAACTAAAACATCACCTTCAACATGAACACAGAGCCCCAGTA 2160
............................................................
............................................................
2161 GATATCAAACTAAAAGCTCAAGGTTGTACTTAAATTATGATTATGATGATCATACAAATT 2220
............................................................
............................................................
2221 GACATGCTTCAAGCGTTTTGAGGA 2244
........................
........................
.
.
This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Policy and Terms of Use