Leersia perrieri (Lperr_V1.4)
Location
About this transcript

This transcript has 33 exons and is annotated with 26 domains and features.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-LPERR12G10280.144621091aa
 
Protein coding
A0A0D9XZE9 Ensembl Canonical
-LPERR12G10280.243841065aa
 
Protein coding
A0A0D9XZF0 -
-LPERR12G10280.341431091aa
 
Protein coding
A0A0D9XZE9 -
-LPERR12G10280.440651065aa
 
Protein coding
A0A0D9XZF0 -
-LPERR12G10280.539601030aa
 
Protein coding
A0A0D9XZF3 -
Markup
  • loaded
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........cgaccttcatttctttctttctttctctctctcccccggtctcttccttg
1LPERR12G10280.1.exon111,553,06511,553,316-0252
CTGGACCCGGAAATCCCCGAATCGCCCCTCGTCACCAACGCGACGAATTCCCCCACTTCT
CTCCCTCCCGCATCAGCAACTCCCCTCCCCTCTCCCTCTCCCCCCTTTCGGCCTCACGCC
GTCCTCGCCGCCGCCGCCGCCGCAGTCGCCGTTGCGGCCGCCGGAATCCGCCACCGCGGA
GGGACGTCATCCTCCTCCTCCTCCGGCCTCGTCTACGGCTCCATGACTATGATGACTCCT
CCGCCCATCGAG                                                
 Intron 1-211,553,31711,553,517201
gtacgtgcccttcccttccccaccc..........cccttcctctatgcctctcccgcag
2LPERR12G10280.1.exon211,553,51811,553,6080191
CAGCAGCAGGAGGACGAGGAGATGCTCGTGCCGCGCCAGGAGCTCCCCGCGGCGGCCCCC
GCCCCTGCAGATGCCGCTCAGCCAATGGAAG                             
 Intron 2-311,553,60911,553,716108
gtgagactgaccggctggttgtttt..........ttgttgtggcggtttctgttgctag
3LPERR12G10280.1.exon311,553,71711,553,86112145
TTGTCGCGCAGACAGAGCCTGCCAACAACACGGCCGAGAGCCAGCCTCCGGAGGACCCGC
AGACGTCGAGGTTCACGTGGACGATCGAGAACTTCACCAGGATCAACGGAAAGAAGCACT
ACTCGGAGCCGTTTGTTGTCGGAGG                                   
 Intron 3-411,553,86211,553,978117
gtttaaatggtaagctttggatcac..........tatatgttctggattttgcgtgcag
4LPERR12G10280.1.exon411,553,97911,554,13621158
GCGTGTGCTTATTTTCCCCAAGGGGAACAATGTGGACCATTTCTCTATGTACTTGGATGT
TGCTGACTCAGCAAATCTCCCTTACGGATGGAATCGGTATGCCCAGTTCAGCTTGGCTGT
TGTGAACCAGATCCATCAGAAGTATACCATACGGAAAG                      
 Intron 4-511,554,13711,555,8881,752
gtattatcttctttcgtctagtgct..........tgtatgttggttacatgttttgcag
5LPERR12G10280.1.exon511,555,88911,556,15410266
ATACTCAACATCAATTTAATGCACGTGAGAGTGATTGGGGTTTCACATCTTTTATGCCTT
TGGGTGATTTGTATGACCCAAGTAGGGGATACCTTGTTAATGATACCGTTGTTGTGGAAG
CTGAAGTTGCTGTTCGCCGAATGGTTGATTACTGGACCTATGACTCGAAAAAGGAAACAG
GATTTGTTGGTCTCAAGAATCAAGGAGCTACCTGTTATATGAACTCTCTTCTACAAACAC
TTTACCATATACCATACTTCAGGAAG                                  
 Intron 5-611,556,15511,556,23278
gtctgtgatcattcctttttctagt..........tgaactaattgatatttcctattag
6LPERR12G10280.1.exon611,556,23311,556,45100219
GCTGTATATCACATGCCAACTACTGAGAATGACATGCCATCTGGGAGTATTCCTTTAGCC
CTGCAGAGCCTTTTTTACAAACTCCAATACAGTGATAACAGCGTAGCTACAAAGGAGCTG
ACTAAATCTTTTGGGTGGGACACTTATGATTCTTTCATGCAGCATGACGTTCAAGAGCTC
AACAGAGTTCTCTGTGAGAAACTTGAAGACAAAATGAAG                     
 Intron 6-711,556,45211,556,51867
gtgaatactataaataaaacaaaat..........gttattaactctttgtttaccccag
7LPERR12G10280.1.exon711,556,51911,556,62701109
GGAACTGTTGTGGAGGGAACAATTGAGCAATTATTCGAAGGACACCACATTAATTATATT
GAGTGCATTAATGTTGACTATAAATCTAACAGAAAAGAATCCTTCTATG           
 Intron 7-811,556,62811,556,71285
gtaagccttgtcattttggttgtat..........ggttactcatgctacgacactgcag
8LPERR12G10280.1.exon811,556,71311,556,82810116
ATCTACAGCTTGATGTCAAAGGTTGTCGTGATGTTTATGCATCATTTGATAAATATGTTG
AAGTGGAGCGTCTAGAGGGTGATAACAAATATCATGCAGAGCAGTATGGCTTACAG    
 Intron 8-911,556,82911,557,180352
gtactgtcaaatcctgcattctgaa..........cttgacattctattaatattttcag
9LPERR12G10280.1.exon911,557,18111,557,2790099
GATGCAAAAAAGGGTGTCCTCTTCCTTGATTTTCCTCCTGTTCTGCAACTTCAACTGAAG
CGTTTTGAATATGATTATATGCGAGATACAATGGTTAAG                     
 Intron 9-1011,557,28011,558,128849
gttggaactatagcacctttacctt..........attgattaaacatccaattttgcag
10LPERR12G10280.1.exon1011,558,12911,558,23802110
ATTAACGACCGGTATGAGTTCCCACTTCAACTTGATCTTGATAGAGATGATGGGAAATAT
CTTGCTCCTGATGCAGATAGAAGTATTAGAAACCTCTATACTCTTCACAG          
 Intron 10-1111,558,23911,558,565327
gtgtgattatatcttgtattttgaa..........cttttattagtgttcttgttcatag
11LPERR12G10280.1.exon1111,558,56611,558,6252260
CGGAGGAGTACATGGTGGTCATTACTATGCTTTCATACGGCCTACGCTCTCAGACCAGTG
 Intron 11-1211,558,62611,559,103478
gtgtgtattgtacatcaaagttttt..........ttctggctgcatgctgtcatttcag
12LPERR12G10280.1.exon1211,559,10411,559,1822079
GTATAAGTTTGATGACGAACGGGTAACAAAAGAAGATACTAAGAAAGCGCTTGAAGAGCA
GTATGGGGGTGAAGAAGAG                                         
 Intron 12-1311,559,18311,559,301119
gtcattttagtattaattattcttc..........tttgtttctcttttggatggaacag
13LPERR12G10280.1.exon1311,559,30211,559,44800147
TTGCCTCAAATAAACCCTGGTTTCAATAACACCCCATTTAAATTCACAAAGTATTCAAAT
GCCTACATGCTTGTCTATATTCGTGAGAGCGACAAGGATAAAATAATGTGTAATGTTGAT
GAGAAGGACATTGCTGAGCATTTGCGG                                 
 Intron 13-1411,559,44911,559,53789
gtaagtagtatgcatatactctcct..........aggtaattcaactgtgcttttgcag
14LPERR12G10280.1.exon1411,559,53811,559,6180081
ATAAGGTTGAAGAAAGAACAAGAAGAGAAGGAACACAAGAAGAAGGAAAAAGCTGAGGCT
CATCTCTACACCATCATAAAG                                       
 Intron 14-1511,559,61911,559,70183
gtctggaaaagtattttcagtttta..........atggctctatctgcaatgcgcccag
15LPERR12G10280.1.exon1511,559,70211,559,82100120
GTTGCTCGAGATGAGGATTTGAAGGAGCAGATTGGTAAGAATATATATTTTGATCTGGTT
GACCATGAAAAAGTTCGCAGCTTCCGGATACAGAAGCAACTACCTTTCACTTCATTTAAG
 Intron 15-1611,559,82211,560,066245
gtaaccattcctaaaacaccttgtt..........ttttattgaatgaactgtttaatag
16LPERR12G10280.1.exon1611,560,06711,560,18900123
GAGGAAGTTGCAAAGGAATATGGGATCCCTGTACAGTTTCAGCGCTTCTGGCTGTGGGCT
AAGAGGCAAAACCATACATACCGACCGAATCGTCCACTTGGCCCTAATGAAGAAGCACAA
TCT                                                         
 Intron 16-1711,560,19011,560,417228
gtgagtcatataatatatcctgaag..........atatcttattacttgtactgcacag
17LPERR12G10280.1.exon1711,560,41811,560,4950078
GTGGGGCAACTTAGGGAGGTCTCTAATAAGGCGCACAATGCTGAGTTGAAGTTGTTTCTG
GAAGTAGAGACTGGACTG                                          
 Intron 17-1811,560,49611,560,601106
gtagtaacatacaccagtagttctt..........accatgtctatttattattgtatag
18LPERR12G10280.1.exon1811,560,60211,560,6900289
GATCTGAAGCCAATCCATCCTCCTGAGAAGAGCAAGGAGGATATACTACTCTTCTTTAAA
CTTTATAACCCTGAAAAGGAAGAACTTTG                               
 Intron 18-1911,560,69111,560,77888
gtatatgtgttatatatttattttt..........atgtggtgttcatgttgttgtgcag
19LPERR12G10280.1.exon1911,560,77911,560,88720109
TTTTGTTGGTAGACTTTTTGTGAAGTCTACGGGAAAACCATCTGAAATCCTGACAAAATT
AAATGAAATGGCCGGATTTGCTCCAGATGAAGAAATAGAGCTATATGAG           
 Intron 19-2011,560,88811,561,162275
gtgagtgccacatccagttatccac..........gctatttggcatttttgtgctgcag
20LPERR12G10280.1.exon2011,561,16311,561,2310069
GAAATTAAGTTTGAGCCAAATGTGATGTGTGAACATATTGACAAGAAACTAACTTTCCGT
TCCAGCCAG                                                   
 Intron 20-2111,561,23211,561,345114
gtttgaaaaaaaacctcgccttttt..........tccattgttttctctaactctgcag
21LPERR12G10280.1.exon2111,561,34611,561,45600111
CTTGAGGACGGGGACATAATATGTTTCCAAAAGTCACCTATATCAGATGGGGAGACTCAA
GTGCGGTATCCAGATGTTCCTTCATTTTTGGAGTATGTGCATAATAGACAG         
 Intron 21-2211,561,45711,561,906450
gtactgtcacatacacaacaactgt..........aacttttcttttgtttatgttatag
22LPERR12G10280.1.exon2211,561,90711,561,9620256
GTTGTGCACTTTCGGTCTCTGGAGAAACCAAAGGAGGATGACTTTTGTTTGGAATT    
 Intron 22-2311,561,96311,562,05593
gtgagggcctgcaaatcactgtttt..........atccatgtttcttgttttcatatag
23LPERR12G10280.1.exon2311,562,05611,562,23320178
GTCAAAGCTTCATACTTATGATGATGTTGTGGAGAGAGTTGCACGCCAACTTGGCTTGGA
TGATCCATCCAAAATTCGGCTTACATCTCACAATTGTTATTCACAGCAACCTAAACCACA
ACCCATCAGATATCGTGGTGTAGAGCACCTATTGGATATGCTTGTCCATTATAATCAG  
 Intron 23-2411,562,23411,562,31178
gtcattttttctttagttgctgtca..........gttttgtttgcattgtcatttgcag
24LPERR12G10280.1.exon2411,562,31211,562,41300102
ACTTCTGACATCCTGTATTATGAGGTTCTGGACATTCCCCTGCCAGAATTGCAGTGTTTG
AAAACTCTTAAAGTTGCATTCCACCATGCAACCAAAGATGAG                  
 Intron 24-2511,562,41411,562,49178
gtttgtctgcgtgcattataccagt..........atatttctgatgcacaactttccag
25LPERR12G10280.1.exon2511,562,49211,562,5630072
GTTGTAATTCATAGCATAAGACTTCCAAAAAACAGCACCATCAGTGATGTGATTACTGAC
TTGAAAACAAAG                                                
 Intron 25-2611,562,56411,562,664101
gtgatcacatagttaatccagtatc..........acaatctttctctttatgttaacag
26LPERR12G10280.1.exon2611,562,66511,562,7300066
GTTGAACTGTCCAATCCTGATGCTGAGCTCCGCCTGCTTGAAGTATTCTACCACAAGATT
TATAAG                                                      
 Intron 26-2711,562,73111,562,845115
gtccatgcacatttatttttgaata..........ttgtgaaaaaaaactttatctgtag
27LPERR12G10280.1.exon2711,562,84611,562,9110066
ATATTTCCGCCTCACGAGAAAATAGAGAACATAAATGATCAGTACTGGACACTACGTGCT
GAGGAG                                                      
 Intron 27-2811,562,91211,563,031120
gtctgtcatatttaacgtctttttt..........acgttgcatctaccacttgaaacag
28LPERR12G10280.1.exon2811,563,03211,563,1150084
ATTCCAGAGGAAGAGAAGAATCTTGGTCCACATGATCGGTTGATTCATGTCTACCATTTC
ATGAAAGATCCTAATCAAAATCAG                                    
 Intron 28-2911,563,11611,563,374259
gtactacactttccatattactgcc..........acattactttaatgactaacagcag
29LPERR12G10280.1.exon2911,563,37511,563,48800114
ATCCAGAATTTTGGAGATCCATTTTTGCTGGTTATCCGTGAAGGTGAAACTGCAGCAGAG
ATATTAGAACGCATTCAGAGAAAACTTCGAGTTACTGATGAGGAATTCGCAAAG      
 Intron 29-3011,563,48911,564,380892
gtattcttcatttttatgttcccta..........catgatgtactttctgattctgcag
30LPERR12G10280.1.exon3011,564,38111,564,4670087
AGGAGAGATGTTTATGGAGCTTGGGAACAGTACCTTGGCTTGGAACATACTGATACAACA
CCAAAAAGGTCTTATACAGCCAATCAG                                 
 Intron 30-3111,564,46811,565,205738
gtagtcactgcggctttagtatgaa..........tactctggtggttcaaactctgcag
31LPERR12G10280.1.exon3111,565,20611,565,8040-599
AATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGATGATTTCTAGCTGGGC
TTTAAGCCCTGGACAAAGGCCTCTTCTGGATAGCATGCCTAAGAGGATCGCAAAGAAGGA
TGACCTCAAACGGAAGAAAAATGGGAACAGAACATATGGCATTTAGGTGCTGAGGCCTAT
ATTGCTTGCCGCTGGTTGACACCGTCGGTGCAGCTTTGTAGTTGGCGGCAGGGATTTTTT
CAAGGCTTTCCATCTTGTTTCCGGGCAAAACGATTGTGTCGAGTGTGATAGCCCCGCTAG
GATAAGGTAGATGTTGCTTTATTTGTGTAGAAGCAAAGCTGGTACATAAGAAAAGAGATT
TTGGTAGGGGCATGTATACAGAATTATAGTCGAGACTGATTGCTTTATTTGCTTCTCCCG
TTTCTGGTAGCCTGGGAGCAGTGGGAGATCGTATAATGGGGTTTGGTGTTGGTTCCAATT
TTCCTTGTCTATTGAGAAATGTAAGAGAATAATTTGCCAGATAGTGCAGCAGCTTTGAGT
TCCTGTCAGCATAACCTGTGTTGAGCTGTTCTATGGGTTAGATTTAACCACCAGTGAAG 
 Intron 31-3211,565,80511,565,88177
gtcattttagatctctcattttgtt..........aatacctctgttatcgcattaacag
32LPERR12G10280.1.exon3211,565,88211,565,953--72
GTTGTGCAAGTGGGAATAATTCCATCGTTGCTTCGCTGATAGTCGGATGCATCGACTGGC
TTGCTACATGAT                                                
 Intron 32-3311,565,95411,566,138185
gtgcgtaagttggagttggtcacta..........tgagaattctgcaaacatgctacag
33LPERR12G10280.1.exon3311,566,13911,566,473--335
TGATCTTGGACGTTCGTGTTTGGGTTTGAAGCAACTTCATTTGGTCGAACAGTGAAGACT
GCAGTAGGATTGCTTGCGTTGCGTCCTGGGAGAATGTGCAGAGGAAACCACGCATGGGGA
GTGAAATTGAGACAATGAGTTCTATAATCAAATTTTACTGTGTACAATGCCACCTCATTT
TTATATAGATTTGTTTTTTAAATAGTTAAGAACTTGTATGGAGTGTTGTTTTTTACTTCG
AATAGTCCGTTTACACTTCATATTACCCAAACGAGATTGCTTGTTTCTACTCATATTACC
TGTCTAAATTTGGTCATCAAACTAGTGATTTTAAC                         
3' downstream sequence
agaatgttctcataacatatttggggaagctaatcaaatgtttattaaac..........