Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: LPERR08G00400.1

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Location

Chromosome 8: 264,516-267,531 forward strand.

About this transcript

This transcript has 6 exons and is annotated with 16 domains and features.

Gene

This transcript is a product of gene LPERR08G00400 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	LPERR08G00400.2	1848	509aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D9X3G5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	LPERR08G00400.1	1514	503aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D9X3G4	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	55	186	-	3.50.30.30	-
Superfamily	111	177	-	SSF52025	-
Superfamily	240	314	-	SSF57850	-
PANTHER	71	325	E3 ubiquitin-protein ligase and sorting receptor	PTHR47168	IPR051653 [Display all genes with this domain]
Pfam	88	171	PA domain	PF02225	IPR003137 [Display all genes with this domain]
CDD	45	193	ZNRF4 /RNF13/RNF167, PA domain	cd02123	IPR044744 [Display all genes with this domain]
Pfam	263	306	Zinc finger, RING-type	PF13639	IPR001841 [Display all genes with this domain]
SMART	264	305	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE profiles	264	306	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	228	311	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	342	368
Seg	218	228
Seg	348	364
TMHMM	37	59
TMHMM	194	216
Alphafold	1	503

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