Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: LPERR06G00100.1

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Location

Chromosome 6: 51,748-58,536 reverse strand.

About this transcript

This transcript has 18 exons and is annotated with 41 domains and features.

Gene

This transcript is a product of gene LPERR06G00100 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	LPERR06G00100.2	3054	1017aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D9WKQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	LPERR06G00100.1	3030	1009aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D9WKQ2	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	155	1006	-	PTHR47025	-
Gene3D	891	996	-	3.40.630.30	-
Pfam	915	1004	-	PF23209	-
Superfamily	898	993	Acyl-CoA N-acyltransferase	SSF55729	IPR016181 [Display all genes with this domain]
Pfam	410	457	Tify domain-binding domain	PF16135	IPR032308 [Display all genes with this domain]
Pfam	583	631	Tify domain-binding domain	PF16135	IPR032308 [Display all genes with this domain]
Superfamily	629	691	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
Superfamily	731	789	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	647	691	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
SMART	649	689	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
SMART	735	792	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
PROSITE patterns	650	688	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
PROSITE patterns	736	791	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
Gene3D	635	725	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Gene3D	733	794	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	27	112
MobiDBLite	29	44
MobiDBLite	55	67
MobiDBLite	223	244
MobiDBLite	227	236
MobiDBLite	283	316
MobiDBLite	300	316
MobiDBLite	342	356
MobiDBLite	342	361
Phobius	1	15
Phobius	1	28
Phobius	16	23
Phobius	24	28
Phobius	29	1009
Seg	2	9
Seg	29	42
Seg	43	55
Seg	59	68
Seg	117	129
Seg	140	172
Seg	177	188
Seg	217	231
Seg	300	316
Seg	357	371
Seg	694	707
Alphafold	1	1009

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