Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: LPERR04G16920.1

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Location

Chromosome 4: 16,598,188-16,606,152 reverse strand.

About this transcript

This transcript has 18 exons and is annotated with 24 domains and features.

Gene

This transcript is a product of gene LPERR04G16920 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	LPERR04G16920.1	2556	851aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D9W7W9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	546	766	-	SSF57997	-
CDD	791	849	-	cd16499	-
Superfamily	792	850	-	SSF57850	-
PANTHER	1	851	E3 ubiquitin ligase Bre1	PTHR23163	IPR013956 [Display all genes with this domain]
Pfam	799	837	Zinc finger, C3HC4 RING-type	PF00097	IPR018957 [Display all genes with this domain]
PROSITE profiles	799	837	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
SMART	799	837	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE patterns	814	823	Zinc finger, RING-type, conserved site	PS00518	IPR017907 [Display all genes with this domain]
Gene3D	780	851	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
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End

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Feature type	Start	End
MobiDBLite	1	31
Seg	198	212
Seg	250	262
Seg	618	630
Alphafold	1	851
Ncoils	210	234
Ncoils	242	279
Ncoils	289	316
Ncoils	336	356
Ncoils	388	415
Ncoils	439	459
Ncoils	552	586
Ncoils	665	699
Ncoils	707	727
Ncoils	756	776

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