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About Leersia perrieri
Leersia perrieri comes from Madagascar. It was the nearest outgroup of the genus Oryza included in the OMAP project. It has 12 chromosomes with a nuclear genome size of 323 Mb (flow cytometry). The sequencing and assembly of this genome was carried out as part of the Oryza Genome Evolution project funded by NSF Award #1026200.
Taxonomy ID 77586
Data source Oryza Genome Evolution Project
Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analyses
Phylogenetic overview of gene families
Download alignments (EMF)
Variation
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene and Ensembl Plants project include:
- Gene phylogenetic trees with other other Gramene species, see example.
- Mapping to the genome of multiple sequence-based feature sets using gramene blat pipeline, see example.
- Identification of various repeat features by programs such as RepeatMasker with MIPS and AGI repeat libraries, and Dust, TRF.