Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: CMS402CT

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Location

Chromosome 19: 1,004,504-1,011,133 forward strand.

About this transcript

This transcript has 1 exon and is annotated with 28 domains and features.

Gene

This transcript is a product of gene CMS402C Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	CMS402CT	6630	2209aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1VM48	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Pfam	82	224	-	PF22958	-
Superfamily	2152	2209	-	SSF57850	-
Gene3D	78	307	Armadillo-like helical	1.25.10.10	IPR011989 [Display all genes with this domain]
Superfamily	74	353	Armadillo-type fold	SSF48371	IPR016024 [Display all genes with this domain]
PANTHER	7	396	E3 ubiquitin-protein ligase listerin	PTHR12389	IPR039795 [Display all genes with this domain]
CDD	2157	2206	Listerin, zinc finger, RING-type	cd16491	IPR039804 [Display all genes with this domain]
SMART	2158	2205	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE profiles	2158	2206	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	2139	2209	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
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End

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Feature type	Start	End
MobiDBLite	1	24
MobiDBLite	1382	1434
MobiDBLite	1399	1434
MobiDBLite	1663	1713
Seg	117	126
Seg	255	274
Seg	396	405
Seg	537	555
Seg	626	637
Seg	711	723
Seg	765	785
Seg	1089	1105
Seg	1151	1172
Seg	1420	1436
Seg	1707	1718
Seg	1860	1870
Seg	1924	1941
Seg	2099	2125
Ncoils	92	112

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