Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bra025504.1

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Description

AT5G41350 (E=7e-086) | zinc finger (C3HC4-type RING finger) family protein

Location

Chromosome A04: 8,287,613-8,288,596 reverse strand.

About this transcript

This transcript has 4 exons and is annotated with 9 domains and features.

Gene

This transcript is a product of gene Bra025504 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	Bra025504.1	645	214aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M4E9P8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Protein summary

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Protein domains for Bra025504.1-P.

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Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database.

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Intrinsically disordered regions predicted by MobiDB lite.

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Protein fingerprints (groups of conserved motifs) from the PRINTS database.

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Protein domains and motifs from the TIGRFAM database.

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Transmembrane helices predicted by TMHMM.

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Signal peptide cleavage sites predicted by SignalP.

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Protein domains and motifs from the PROSITE patterns database.

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NCBIfam is a collection of protein families based on Hidden Markov Models (HMMs).

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Conserved Domain Database models.

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HAMAP families.

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Structure-Function Linkage Database families.

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Coiled-coil regions predicted by Ncoils.

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Low complexity peptide sequences identified by Seg.

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Protein features that represent the mapping between Ensembl proteins (ENSP) and AlphaFoldDB protein structures (including their corresponding chains). Imported via UniProt mappings

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Protein domains and motifs from the SUPERFAMILY database.

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Protein domains and motifs from the SMART database.

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Protein domains and motifs from the Pfam database.

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Protein domains and motifs from the PROSITE profiles database.

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PANTHER families.

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CATH/Gene3D families.

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Statistics

Ave. residue weight: 110.568 g/mol

Charge: -24.5

Isoelectric point: 3.9572

Molecular weight: 23,661.51 g/mol

Number of residues: 214 aa

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