Brassica rapa (Brapa_1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
AT5G60410 (E=9e-076) ATSIZ1, SIZ1 | SIZ1; DNA binding / SUMO ligase
Chromosome A09: 35,627,492-35,628,997 reverse strand.
This transcript has 7 exons and is annotated with 10 domains and features.
This transcript is a product of gene Bra031604 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........atttagaacagagctttttgcttcttgtttgtgtctgggtggttcacgac
| ||||||
| 1 | Bra031604.1.exon1 | 35,628,997 | 35,628,974 | 0 | 0 | 24 |
ATGGATTTGGAAGCTAGCTGTAAG
|
| Intron 1-2 | 35,628,973 | 35,628,573 | 401 |
gtattttatttgtctgagagatcgg..........cttttgatttttttttggttaacag
| |||
| 2 | Bra031604.1.exon2 | 35,628,572 | 35,628,530 | 0 | 1 | 43 |
GATCTTGTTGAGCGGGTCTTGACACATCTTTCTGACGGACAAG
|
| Intron 2-3 | 35,628,529 | 35,628,449 | 81 |
gttaattgaaacgcttctcttttgt..........ttctctcttcgtttcatttggacag
| |||
| 3 | Bra031604.1.exon3 | 35,628,448 | 35,628,376 | 1 | 2 | 73 |
CCGCCAGGTTGTGGTCTAAAAAGAATACAATGGCGAGGGAAGACGTTGCAAAACTAGTGG ATGATACATACAG |
| Intron 3-4 | 35,628,375 | 35,628,286 | 90 |
gtgagggatcgtttctttcaatgga..........ttttttttttttttgtgttccgtag
| |||
| 4 | Bra031604.1.exon4 | 35,628,285 | 35,628,123 | 2 | 0 | 163 |
GAAAATGCAAGTATCTGGGGCAAGTGATTTAGCATCAAAAGGACAAGTAAGTTCAGATAC TAGTACTCTGAGAGTCAAGGGGGAGCCTGAAGATTCCTTTCGACAAGAAGTGAAAGTTCG ATGTGTTTGTGGAAGTTCACTGGAGACTGACTCAATGATACAG |
| Intron 4-5 | 35,628,122 | 35,628,016 | 107 |
gtaaatctagagaaaaaaactctgt..........tctcttcttttattttcgatttcag
| |||
| 5 | Bra031604.1.exon5 | 35,628,015 | 35,627,885 | 0 | 2 | 131 |
TGTGAGGATCCTAGATGCCATGTTTGGCAGCATGTTGGCTGTGTAATTGTCCCGGAAAAG TCAATGGATGCAAATCCGCCACTTCCTGAAACCTTTTATTGTGAAGTCTGTCGACTTACC CGAGCTGACCC |
| Intron 5-6 | 35,627,884 | 35,627,752 | 133 |
gtaagtagtgttttcatagaagttg..........ctcctacatggttttccttgggcag
| |||
| 6 | Bra031604.1.exon6 | 35,627,751 | 35,627,683 | 2 | 2 | 69 |
GTTTTTGGTTACAGTGGCACATCCACTTTATCCAGTGAGGTTGACTCCAACTACCATCTC ATCTGATGG |
| Intron 6-7 | 35,627,682 | 35,627,568 | 115 |
gtaagaacttcatatttatcatcga..........acgttgttgcttgtttgtgttacag
| |||
| 7 | Bra031604.1.exon7 | 35,627,567 | 35,627,492 | 2 | 0 | 76 |
TTTCGTCCCTTCTCCGTCAGAACGTAAGTCTCGTAATTGGGTTCTTGATAGGAGGTGGCG GAGCTTCGTCACATAA |
| 3' downstream sequence |
aagcaacattgtttttgctttacatttgttatctgaattttgagacttct..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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