Brassica rapa (Brapa_1.0)
Description

AT5G55760 (E=3e-231) SRT1 | SRT1 (sirtuin 1); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding

Location
About this transcript

This transcript has 14 exons and is annotated with 12 domains and features.

Gene

This transcript is a product of gene Bra028961 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-Bra028961.11407468aa
 
Protein coding
M4EJJ5 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........cttgtcgacgagagaaaaagagaagatcttttttgtaagaaaaatctcaa
1Bra028961.1.exon15,609,9435,609,8450099
ATGTCTTTAGGCTACGCAGAGAAACTATCTTTCATCGAAGATGTTGGTCAAGTGGGCATG
GCTGAATTCTTCGACTCATCTCATGTTCTGCAATGCAAG                     
 Intron 1-25,609,8445,609,466379
gtctctcctcctgggttttccaggg..........atttactgtctgattttgtttgcag
2Bra028961.1.exon25,609,4655,609,4360030
ATTGAAGAACTTGCTAAGATGATTCAAAAG                              
 Intron 2-35,609,4355,609,327109
gtttggatctgtggactctctttcg..........caagaaggtggtttaatgtttgcag
3Bra028961.1.exon35,609,3265,609,2340093
AGTAAGCATCTAGTGGTGTTTACAGGTGCAGGCATCTCAACTTCTTGTGGTATTCCTGAT
TTCAGAGGCCCCAAAGGCATTTGGACATTGCAG                           
 Intron 3-45,609,2335,609,14490
gtctgttattttttattcaccatca..........tgattcatggtttatttggtctcag
4Bra028961.1.exon45,609,1435,609,02400120
CGCGAGGGCAAAGATTTACCGAAAGCATCTCTGCCGTTTCATCGTGCAATGCCGAGCATG
ACTCATATGGCTTTGGTTGAATTAGAAAGAGCTGGCATTTTAAAGTTTGTCATCAGTCAG
 Intron 4-55,609,0235,608,95272
gtaaatccttcttctttcgccttta..........gatcttgtgtttattaaattattag
5Bra028961.1.exon55,608,9515,608,85102101
AATGTGGACGGCTTGCATCTTCGATCTGGGATACCAAGAGAGAAGCTCTCTGAACTGCAT
GGAGACTCTTTTATGGAGATGTGCCCATCATGTGGAGCTGA                   
 Intron 5-65,608,8505,608,76487
gtaagaccaacatacatatgctgtt..........acagcctttctgaacttttctgaag
6Bra028961.1.exon65,608,7635,608,65520109
GTACCTGCGTGATTTTGAGGTGGAAACTATTGGATTAAAAGAGACCTCGAGAAAGTGCTC
TAATGCAAAGTGTGGTGCTAAACTCAAAGATACGGTCTTAGATTGGGAG           
 Intron 6-75,608,6545,608,543112
gtgagttttcgttgcctttctaaat..........tcttgcttctttctttctatggcag
7Bra028961.1.exon75,608,5425,608,4630280
GATGCTTTGCCTCCAAAAGAGATTGATCCTGCAGAGAAACATTGCAAAATGGCTGATCTT
GTACTATGTTTGGGTACCAG                                        
 Intron 7-85,608,4625,608,345118
gtaattaatgactcataagaactct..........ttataagccttactcctttttgcag
8Bra028961.1.exon85,608,3445,608,2662079
TTTGCAGATAACCCCTGCTTGCAACTTGCCTCTCAAGTGTCTCAGGGGTGGAGGCAAGAT
CGTCATTGTTAATCTTCAG                                         
 Intron 8-95,608,2655,608,145121
gtaaactatctctggacagtgttca..........agactaattgtatgcgtcgttacag
9Bra028961.1.exon95,608,1445,608,0910054
AAAACCCCAAAGGACAAGAAAGCAGACGTAGTGATTCACGGTTTTGTTGATAAG      
 Intron 9-105,608,0905,607,945146
gtaagctttcacctctttaaatatg..........ccttcattattcttttgatgtgcag
10Bra028961.1.exon105,607,9445,607,8480197
GTGGTTGCAGGGGTCATGGAAACTCTCAACATGCAGATTCCCCCATATGTCAGAATAGAT
CTTTTCCAGATAATACTAAACCAATCCTTGAGCAGAG                       
 Intron 10-115,607,8475,607,75989
gtctaatagctaccaaatatttgat..........cacatgttttcatttctgtttacag
11Bra028961.1.exon115,607,7585,607,6761083
ATGAGAGGTACATTAACTGGACACTTCGTGTTGCAAGTGTTCATGGATTAACTTCTCAGC
TACCATTCATTGAATCAGTTGAG                                     
 Intron 11-125,607,6755,607,58591
gtaaacatatagaaaactaactatt..........ctgattcgtttcatttgtgaaccag
12Bra028961.1.exon125,607,5845,607,5170268
GTCTCCTTCTCAGACAACCATAACTTCAAAGATGCAGTTCTCGATGAGCAGCCGTTTATC
ATAAAAAG                                                    
 Intron 12-135,607,5165,607,44473
gtaacaaacacctttcttctgagcc..........tataacattatcttctctcatacag
13Bra028961.1.exon135,607,4435,607,34120103
GAGAACAACGGAAACCGAGACATTTGACATATTCTTGAAAATCAACTACAGTGAGGGTTG
TGACTGTCTCTCCACCAAAATTACCATTCCCTTCAAATATGAG                 
 Intron 13-145,607,3405,607,26180
gttagttaagacacatactattcga..........agcatttttcgaataacttatgtag
14Bra028961.1.exon145,607,2605,606,97000291
GTTTCAACGGAAGAGCATGAGGAGGAGACTATTGACAAGGAGGCTGTGCTGCAAAGCCTG
AGAGAGAAAGCAGTTGAAGAGTCCAGCTGCGGGCAAAGCGGTGTGGTCGAGAGAAGATTT
GTTTCTGAGCCGAGAAGTGAAACCATTGTGTATGCAACTGTGACCAATCTCAGGACGTTC
CATTGTCAACAATCTGTGCTTGCTAATGGAGACCTCAAATGGAAGATGGAAGGTTCTGGA
ACAACGTCTCGTAAACGTTCTAGAACCGGGAAACGAAAGCCAAGGGCATAG         
3' downstream sequence
gaagaagaagaagaaagatctttctttgtgtataaacaagtaaatgacct..........