Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bra000787.1

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Description

AT4G04210 (E=5e-120) PUX4 | PUX4; protein binding

Location

Chromosome A03: 13,106,410-13,108,078 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 21 domains and features.

Gene

This transcript is a product of gene Bra000787 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	Bra000787.1	936	311aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M4C9A8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........aaagtctctcggctctttcctctctctctctctctctctgagaaaaaaaa
1	Bra000787.1.exon1	13,106,410	13,106,558	0	2	149	ATGTCATCGAAGGACAAGAAACCGGCGAGGCCATCGAGTAGCCGAGCCGGTGGAATCCGC ACTCTGTCCGATCTCAATCGAAGGTCCGGTCCTGACTCCGACAGTGATTCCGACAGTCCT CAGGAATACTACACCGGCGGTGAGAAAAG
	Intron 1-2	13,106,559	13,106,681			123	gtaacctaattatgatacaagtgtg..........tttttatattcgaatcttgttgcag
2	Bra000787.1.exon2	13,106,682	13,106,961	2	0	280	TGGTATGCTAGTTCAAGATCCTTCGAAGAAAGACGATGTTGATGAGATATTCAATCAAGC TAGACAACTAGGAGCTGTGGAAGGACCTCTCGAGACTCCTTCTTCGAGTTCCACGAGCTT CACCGGAACTGGGAGGTTGCTTTCAGGAGAAAGTGTTTCAACTGGTTCTCAACAGCCTGA GCCTGTGGTTCACACTATTGTTTTTTGGGCTAATGGGTTCACCATTGATGATGGTCCTTT GAGGAAGTTGGATGATCCAGAGAATGCTTCTTTTCTCGAG
	Intron 2-3	13,106,962	13,107,050			89	gtacataattaagttccatgtgaaa..........tgtttttttttttttttgattgtag
3	Bra000787.1.exon3	13,107,051	13,107,146	0	0	96	AGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCAGATAGAAGAGCTCCTGTT CATGTCAATCTGATGAGGAGGGAAGAGAAATGTCCA
	Intron 3-4	13,107,147	13,107,667			521	gtgagtcctctctatactctatatc..........actatcttgtttttggtcattgtag
4	Bra000787.1.exon4	13,107,668	13,108,078	0	0	411	GAAAGAGAGAAGCGTAAGGTTTCATTTCAGGGTGTTGGGAGGACTCTAGGTGGTAGCAGC AACGATAGCAGCGGAAGTGGCTCACCAATGGCTCCAGAGACCGCCACCATTCCCATCCAA ACCGGTTTAGCAGCACCAACTCCAACTCCATGTCAATGTCTTGTAATAGATGAAACCGTT CCGACCACATCGATCCAGATTAGATTAACGGATGGGACCAGGCTTGTGGGGAAGTTCAAC CACCATCACACTGTCAACGACATTCGAGGTTTCATTGACTCTTCTCGACCTGGAGCTCCG GTTAACTACCAGCTTCAGACAATGGGGTTCCCACCTACGCCTTTGACTGATCTCACTCAG ACCATTGAACAAGCTGGTCTCGCCAACTCTGTTGTTCTTCAGAAATTCTAG
	3' downstream sequence						aaacttctagaatgttttcttttttctttctttatgtttctatatatgcg..........

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