Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bra035110.1

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Description

AT1G79350 (E=0.0) EMB1135 | EMB1135 (embryo defective 1135); DNA binding / protein binding / zinc ion binding

Location

Chromosome A07: 22,211,085-22,219,410 reverse strand.

About this transcript

This transcript has 31 exons and is annotated with 33 domains and features.

Gene

This transcript is a product of gene Bra035110 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	Bra035110.1	3972	1323aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M4F213	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Pfam	25	59	-	PF23547	-
Pfam	113	145	-	PF23548	-
Superfamily	227	450	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Gene3D	235	437	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Superfamily	831	931	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
PANTHER	15	1317	Protein strawberry notch	PTHR12706	IPR026741 [Display all genes with this domain]
Pfam	207	508	Strawberry notch, AAA domain	PF13872	IPR039187 [Display all genes with this domain]
Pfam	776	1078	Strawberry notch, helicase C domain	PF13871	IPR026937 [Display all genes with this domain]
Superfamily	675	739	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	685	735	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	688	732	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	687	733	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
PROSITE patterns	688	732	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
Gene3D	633	745	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
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End

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Feature type	Start	End
MobiDBLite	1	19
MobiDBLite	1	24
MobiDBLite	61	109
MobiDBLite	67	81
MobiDBLite	82	94
MobiDBLite	152	198
MobiDBLite	162	171
MobiDBLite	172	187
MobiDBLite	620	682
MobiDBLite	662	682
Phobius	1	1258
Phobius	1259	1277
Phobius	1278	1323
Seg	4	21
Seg	67	103
Seg	154	186
Seg	267	280
Seg	661	684
Seg	854	865

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