Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bra029577.1

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Description

AT4G05420 (E=0.0) DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding

Location

Chromosome A09: 16,915,602-16,921,329 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 12 domains and features and maps to 2 oligo probes.

Gene

This transcript is a product of gene Bra029577 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	Bra029577.1	3261	1086aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M4ELA9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	1000	1086	-	1.10.150.910	-
Pfam	743	1055	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	PF03178	IPR004871 [Display all genes with this domain]
Pfam	76	535	Cleavage/polyadenylation specificity factor, A subunit, N-terminal	PF10433	IPR018846 [Display all genes with this domain]
PANTHER	4	1083	RSE1/DDB1/CFT1/CPSF1	PTHR10644	IPR050358 [Display all genes with this domain]
Superfamily	465	885	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	5	995	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]
Gene3D	15	347	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]
Gene3D	386	701	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Filter

Feature type	Start	End
Seg	433	442
Alphafold	1	1086
Alphafold	1	1086
Ncoils	422	442

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