Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bra025948.1

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Description

AT1G17790 (E=2e-094) | DNA-binding bromodomain-containing protein

Location

Chromosome A06: 6,846,092-6,847,597 reverse strand.

About this transcript

This transcript has 4 exons and is annotated with 23 domains and features.

Gene

This transcript is a product of gene Bra025948 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	Bra025948.1	1245	414aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M4EAY9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	3	410	-	PTHR45926	-
SMART	61	171	Bromodomain	SM00297	IPR001487 [Display all genes with this domain]
Pfam	72	156	Bromodomain	PF00439	IPR001487 [Display all genes with this domain]
PROSITE profiles	80	152	Bromodomain	PS50014	IPR001487 [Display all genes with this domain]
Prints	83	96	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Prints	99	115	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Prints	115	133	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Prints	133	152	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Gene3D	43	188	Bromodomain-like superfamily	1.20.920.10	IPR036427 [Display all genes with this domain]
Superfamily	60	171	Bromodomain-like superfamily	SSF47370	IPR036427 [Display all genes with this domain]
PROSITE profiles	248	329	NET domain	PS51525	IPR027353 [Display all genes with this domain]
Pfam	258	319	NET domain	PF17035	IPR027353 [Display all genes with this domain]
Gene3D	252	329	NET domain superfamily	1.20.1270.220	IPR038336 [Display all genes with this domain]
CDD	69	166	Putative transcription factor GTE, bromodomain	cd05506	IPR037377 [Display all genes with this domain]

Other features

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Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
MobiDBLite	328	343
MobiDBLite	328	414
MobiDBLite	381	414
Seg	39	66
Seg	186	218
Seg	229	243
Seg	293	309
Seg	381	411
Alphafold	1	414

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