Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bra024442.1

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Description

AT5G67530 (E=7e-285) | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein

Location

Chromosome A06: 15,789,422-15,792,109 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 26 domains and features and maps to 2 oligo probes.

Gene

This transcript is a product of gene Bra024442 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	Bra024442.1	1794	597aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M4E6N8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	37	104	-	SSF57850	-
CDD	345	502	-	cd01923	-
Gene3D	325	510	Cyclophilin-like domain superfamily	2.40.100.10	IPR029000 [Display all genes with this domain]
Superfamily	345	507	Cyclophilin-like domain superfamily	SSF50891	IPR029000 [Display all genes with this domain]
Pfam	345	496	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PF00160	IPR002130 [Display all genes with this domain]
PROSITE profiles	353	496	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PS50072	IPR002130 [Display all genes with this domain]
Prints	359	374	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PR00153	IPR002130 [Display all genes with this domain]
Prints	385	397	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PR00153	IPR002130 [Display all genes with this domain]
Prints	428	443	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PR00153	IPR002130 [Display all genes with this domain]
Prints	443	455	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PR00153	IPR002130 [Display all genes with this domain]
Prints	456	471	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PR00153	IPR002130 [Display all genes with this domain]
PROSITE patterns	380	397	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	PS00170	IPR020892 [Display all genes with this domain]
PANTHER	338	502	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-like	PTHR45625	IPR044666 [Display all genes with this domain]
CDD	38	110	Peptidyl-prolyl cis-trans isomerase like 2, U-box domain	cd16663	IPR026951 [Display all genes with this domain]
PROSITE profiles	35	108	U-box domain	PS51698	IPR003613 [Display all genes with this domain]
SMART	39	101	U-box domain	SM00504	IPR003613 [Display all genes with this domain]
Gene3D	40	95	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	500	597
MobiDBLite	511	527
MobiDBLite	557	597
Seg	233	239
Seg	273	287
Seg	396	406
Seg	503	526
Seg	535	549
Alphafold	1	597

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