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    Transcript: Bra020883.1

    Description

    AT4G21070 (E=3e-181) ATBRCA1, BRCA1 | ATBRCA1; ubiquitin-protein ligase

    Location

    Chromosome A08: 11,465,636-11,469,894 reverse strand.

    About this transcript

    This transcript has 14 exons and is annotated with 42 domains and features.

    Gene

    This transcript is a product of gene Bra020883 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
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    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    -Bra020883.12697898aa
     
    Protein coding
    		M4DWI9 -Ensembl Canonical

    Domains & features

    Domains

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    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
    Download what you seeDownload whole table
    Domain sourceStartEndDescriptionAccessionInterPro
    Superfamily879-SSF57850-
    Pfam1755-PF13923-
    Pfam559618-PF13771-
    CDD691769-cd17734-
    PIRSF3311BRCA1-associatedPIRSF001734IPR031099 [Display all genes with this domain]
    PANTHER6897BRCA1-associatedPTHR13763IPR031099 [Display all genes with this domain]
    PIRSF298386BRCA1-associatedPIRSF001734IPR031099 [Display all genes with this domain]
    PIRSF393445BRCA1-associatedPIRSF001734IPR031099 [Display all genes with this domain]
    PIRSF430503BRCA1-associatedPIRSF001734IPR031099 [Display all genes with this domain]
    PIRSF495629BRCA1-associatedPIRSF001734IPR031099 [Display all genes with this domain]
    PIRSF622898BRCA1-associatedPIRSF001734IPR031099 [Display all genes with this domain]
    PROSITE profiles678776BRCT domainPS50172IPR001357 [Display all genes with this domain]
    SMART680766BRCT domainSM00292IPR001357 [Display all genes with this domain]
    Pfam689763BRCT domainPF00533IPR001357 [Display all genes with this domain]
    PROSITE profiles797898BRCT domainPS50172IPR001357 [Display all genes with this domain]
    SMART799892BRCT domainSM00292IPR001357 [Display all genes with this domain]
    Pfam800894BRCT domainPF16589IPR001357 [Display all genes with this domain]
    Gene3D687793BRCT domain superfamily3.40.50.10190IPR036420 [Display all genes with this domain]
    Superfamily690793BRCT domain superfamilySSF52113IPR036420 [Display all genes with this domain]
    Gene3D799892BRCT domain superfamily3.40.50.10190IPR036420 [Display all genes with this domain]
    Superfamily801896BRCT domain superfamilySSF52113IPR036420 [Display all genes with this domain]
    PROSITE profiles518638Extended PHD (ePHD) domainPS51805IPR034732 [Display all genes with this domain]
    SMART1855Zinc finger, RING-typeSM00184IPR001841 [Display all genes with this domain]
    PROSITE profiles1856Zinc finger, RING-typePS50089IPR001841 [Display all genes with this domain]
    PROSITE patterns3342Zinc finger, RING-type, conserved sitePS00518IPR017907 [Display all genes with this domain]
    Gene3D385Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]
    Gene3D515639Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]

    Other features

    Show/hide columns
    • Feature type
    • Start
    • End
    Download what you seeDownload whole table
    Feature typeStartEnd
    MobiDBLite90178
    MobiDBLite100118
    MobiDBLite145173
    MobiDBLite213507
    MobiDBLite238262
    MobiDBLite292311
    MobiDBLite350369
    MobiDBLite422466
    MobiDBLite467502
    MobiDBLite645671
    Seg112136
    Seg392402
    Seg450463
    Seg868883
    Alphafold1898

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