Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bra016893.1

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Description

AT2G42150 (E=2e-108) | DNA-binding bromodomain-containing protein

Location

Chromosome A04: 17,725,934-17,729,424 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene Bra016893 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	Bra016893.1	1809	602aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M4DK65	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	8	73	-	1.10.10.60	-
PANTHER	164	579	-	PTHR37888	-
CDD	245	332	-	cd04369	-
SMART	228	337	Bromodomain	SM00297	IPR001487 [Display all genes with this domain]
Pfam	244	322	Bromodomain	PF00439	IPR001487 [Display all genes with this domain]
PROSITE profiles	247	318	Bromodomain	PS50014	IPR001487 [Display all genes with this domain]
Gene3D	203	347	Bromodomain-like superfamily	1.20.920.10	IPR036427 [Display all genes with this domain]
Superfamily	216	337	Bromodomain-like superfamily	SSF47370	IPR036427 [Display all genes with this domain]
Superfamily	9	68	Homedomain-like superfamily	SSF46689	IPR009057 [Display all genes with this domain]
SMART	12	68	SANT/Myb domain	SM00717	IPR001005 [Display all genes with this domain]
CDD	15	62	SANT/Myb domain	cd00167	IPR001005 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	117	140
MobiDBLite	117	237
MobiDBLite	167	192
MobiDBLite	205	214
MobiDBLite	431	602
MobiDBLite	443	454
MobiDBLite	487	499
MobiDBLite	500	523
MobiDBLite	541	551
MobiDBLite	553	563
MobiDBLite	592	602
Seg	541	581
Alphafold	1	602
Ncoils	94	128

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Personal Data