Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: Bra014421.1

.

Description

AT3G61790 (E=1e-175) | seven in absentia (SINA) family protein

Location

Chromosome A04: 548,437-550,132 forward strand.

About this transcript

This transcript has 3 exons and is annotated with 15 domains and features.

Gene

This transcript is a product of gene Bra014421 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	Bra014421.1	963	320aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M4DD53	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	55	101	-	SSF57850	-
CDD	59	97	-	cd16571	-
Pfam	110	185	-	PF21361	-
Superfamily	114	306	-	SSF49599	-
CDD	175	303	-	cd03829	-
PANTHER	27	304	E3 ubiquitin-protein ligase SINA	PTHR10315	IPR052088 [Display all genes with this domain]
Pfam	61	96	E3 ubiquitin-protein ligase Sina-like, RING finger	PF21362	IPR049548 [Display all genes with this domain]
Pfam	206	302	Seven-in-absentia protein, TRAF-like domain	PF03145	IPR018121 [Display all genes with this domain]
Gene3D	169	302	TRAF-like	2.60.210.10	IPR008974 [Display all genes with this domain]
PROSITE profiles	61	97	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	11	113	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Gene3D	114	168	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
PROSITE profiles	114	174	Zinc finger, SIAH-type	PS51081	IPR013010 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
Seg	36	46
Alphafold	1	320

.

Personal Data