Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bra010618.1

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Description

AT4G37880 (E=5e-172) | protein binding / zinc ion binding

Location

Chromosome A08: 15,610,654-15,611,811 forward strand.

About this transcript

This transcript has 1 exon and is annotated with 13 domains and features.

Gene

This transcript is a product of gene Bra010618 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	Bra010618.1	1158	385aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M4D2B8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	321	381	-	SSF57850	-
SMART	198	294	CRA domain	SM00757	IPR013144 [Display all genes with this domain]
PROSITE profiles	144	201	CTLH, C-terminal LisH motif	PS50897	IPR006595 [Display all genes with this domain]
SMART	144	201	CTLH, C-terminal LisH motif	SM00668	IPR006595 [Display all genes with this domain]
Pfam	145	288	CTLH/CRA C-terminal to LisH motif domain	PF10607	IPR024964 [Display all genes with this domain]
PANTHER	2	385	Fyv10 family	PTHR12170	IPR045098 [Display all genes with this domain]
PROSITE profiles	327	371	Gid-type RING finger domain	PS51867	IPR044063 [Display all genes with this domain]
PROSITE profiles	105	137	LIS1 homology motif	PS50896	IPR006594 [Display all genes with this domain]
CDD	325	372	Rmd5, degenerated RING (dRING) finger	cd16652	IPR037683 [Display all genes with this domain]
PROSITE profiles	327	371	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Pfam	327	369	Zinc finger, RING-type, eukaryotic	PF13445	IPR027370 [Display all genes with this domain]
Gene3D	314	384	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type	Start	End
Alphafold	1	385

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